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13 protocols using anti tnf α apc

1

Quantification of CMV-specific T-cells

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After 3 days of incubation in the presence or absence of vitamin C, 1 × 106 cells per sample were stimulated with peptide pool CMV pp65pp for one hour followed by addition of Brefeldin A (BioLegend) and incubation for another 15 h at 37 °C and 5% CO2. Cells were resuspended, washed and extracellularly stained using FITC anti-CD3, APC/Cy7 anti-CD8 and PerCP anti-CD4 (all BioLegend). Subsequently, cells were fixed, permeabilized and intracellularly stained with APC anti-TNF-α (BioLegend) using IntraPrep kit (purchased by Beckman Coulter) following the manufacturer’s instructions. Samples were acquired on a FACS Canto 10c, and gates were set based on the forward scatter versus side scatter properties of lymphocytes. At least 30,000 events were acquired in the CD3+ gate. Data were analyzed using FlowJo_v10.7.1 software.
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2

Antigen-Specific T Cell Responses Analysis

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In order to evaluate the antigen-specific T cells to the RBD protein, a single cell suspension was prepared from the spleen of the mice and stimulated in a 96-well plate, using eBioscience Cell Stimulation Cocktail (Invitrogen, Waltham, MA, USA) at 37 °C with 5% CO2 for 8–12 h. The cells were processed by a fixation/permeabilization kit (BD Biosciences, Franklin Lakes, NJ, USA), followed by staining with IL-4 (BD), IFN-γ, and TNF-α (BioLegend, San Diego, CA, USA). The following cytokine antibodies were used: PE-Cy7-anti IL-4 (BD), PE-anti IFN-γ (BioLegend), and APC-anti TNF-α (BioLegend). The proportion of IFN-γ+ and TNF-α+ CD8+ T cells and memory T cells were analyzed by flow cytometry (BD Biosciences, Franklin Lakes, NJ, USA) and FlowJo software (version 10.6.2).
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3

Multiparametric Flow Cytometry Analysis of Tumor-Infiltrating Immune Cells

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Tumors were dissociated into single cells and were then filtrated through 70 μm cell strainers. Single cells were resuspended in cell staining buffer (#FXP005, 4abio) and then stained with fluorochrome-conjugated antibody combinations at appropriate concentration. The antibody information are shown as follows: PerCP-Cy5.5-Anti-CD45 (#103131, Biolegend), PE-Cy7-Anti-CD4 (#100421, Biolegend), FITC-Anti-CD8 (#ab237367, Abcam), APC-Anti-TNF-α (#506307, Biolegend), PE-Anti-IFN-γ (#505807, Biolegend), PerCP-Cy5.5-Anti-CD45R (#ab210342, Abcam), and PE-Anti-CD3 (#ab22268, Abcam). DAPI (#D9542, Sigma) was added to exclude dead cells. After washing, the stained cells were analyzed on a BD Fortessa machine. The data were processed with FlowJo software.
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4

Flow Cytometry for Immune Cell Profiling

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The following Abs were used for short-term culture or surface marker and ICS for flow cytometry (all Abs were from Biolegend): anti-CD3-PerCP-cy5.5, anti-CD8-APC-Cy7, anti-CD4-PE-Cy7, anti-CCR5-PE, anti-CXCR3-APC, anti-CXCR4-PE, anti-CCR7-APC, anti-granzyme A-PE, anti-Perforin-APC, anti-IFN-γ-PE, and anti-TNF-α-APC. The reagents listed below were all commercial products: brefeldin A (GolgiPlug, BD Biosciences), Cytofix/Cytoperm (BD Biosciences), and Perm buffer (BD Biosciences).
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5

Multiparameter Flow Cytometry Analysis

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These following antibodies (Abs) were used for surface marker staining and ICS combined with flow cytometry (all Abs were from Biolegend): anti-CD3-PErCP-cy5.5 (UCHT1), anti-CD3-FITC (UCHT1), anti-CD3-PE (HIT3a), anti-CD4-APC (OKT4), anti-CD4-APC-cy7 (RPA-T4), anti-CD8-PE (RPA-T8), anti-CD8-APC-cy7 (SK1), anti-CD14-FITC (HCD14), anti-IFN-γ-PE (4S.B3), anti-TNF-α-APC (MAb11), anti-IL-17A-PE-cy7 (BL168), anti-Foxp3-PE (206D), anti-TGF-β-PE-cy7 (TW4-2F8), anti-Perforin-PC (dG9), anti-granzyme A-PE (CB9),.
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6

Multiparametric Flow Cytometry Analysis

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Anti-CD45 BV510 or APC, anti-Ly6C APC-Cy7, anti-Ly6G PE, anti-MHCII BV421, anti-CD11b PerCPCy5.5, anti-CD11c PE-Cy7, anti-IFNγ PE, anti-TNFα APC, anti-CD3 PerCPCy5.5, anti-CD8 PE, anti-CD4 APC-Cy7, anti-NKp46 PE-Cy7, anti-B220 Alexa488 were from Biolegend (San Diego, CA). Anti-CD16/32 (Fc-block), anti-SiglecF PE and anti-F4/80 Alexa488 were from BD Biosciences (San Diego, CA). Blue fixable Live/Dead was from Invitrogen. Anti-CCR2 (clone MC-21) was provided by Dr. Matthias Mack. Anti-IL5 (clone TRFK5) was provided by Dr. James Lee (Mayo Clinic, Scottsdale, AZ). Recombinant mouse IFNγ was from R&D Systems. Collagenase D was from Roche Diagnostics (Indianapolis, IN) and Collagenase VIII was from Sigma-Aldrich (St. Louis, MO). 1-oleoyl-2-hydroxy-sn-glycerol-3-phosphocholine (LPC) was from Avanti Polar Lipids, Inc. (Alabaster, AL).
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7

Cytokine Production and Degranulation of NK Cells

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IFN-γ and TNF-α production by NK cells was evaluated in all samples available for phenotypic analysis after overnight stimulation with or without IL-12 and IL-18 (5 ng/mL) in the presence of 10 µg/mL of brefeldin A (BFA) added during the last 3 h of culture. Surface staining with anti-CD3-PE, anti-CD56-PE-CF594, and anti-CD16-FITC (BD Bioscience, Franklin Lakes, NJ, USA) was performed. Then, cells were fixed with medium A reagent and permeabilized with medium B reagent (Nordic Mubio, Lifespan Biosciences, Seattle, WA, USA) in accordance with manufacturer’s instructions. Cytokine determinations were performed by intracellular cytokine staining (ICS) with anti-IFN-γ-PerCp-Cy5.5 (BioLegend, San Diego, CA, USA) and anti-TNF-α-APC (BioLegend, San Diego, CA, USA) monoclonal antibodies and analyzed by flow cytometry. The CD107a degranulation assay was performed to assess the cytotoxic potential. Cells were stimulated overnight with IL-12 and IL-18 (as above), then incubated with K562 target cells for the last 4 h in the presence of BFA and anti-CD107a-PE-Cy7 (BD Bioscience, Franklin Lakes, NJ, USA).
Data are expressed as the difference between the percentage of cytokine or CD107a-positive+ NK cells in the stimulated and unstimulated samples.
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8

Multicolor Flow Cytometry Analysis of Tumor-Infiltrating Lymphocytes

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Nine days after the treatment of MC38 tumours with indicated compounds, tumor infiltrating lymphocytes (TILs) were isolated and stained. For stimulation, cells were incubated with cell stimulation cocktail (PMA and Ionomycin) plus protein transport inhibitor (Brefeldin A and Menesin) for 4 hrs. Cells were analysed by multicolour flow cytometry (BD LSR Fortessa X-20). Antibodies: anti-CD45 BV605 (#103140, Biolegend); anti-CD3 BV875 (#100355, Biolegend); anti-CD4 BV650 (#100469, Biolegend); anti-CD8 (#100784, Biolegend); anti-FOXP3 PerCP-Cy5.5 (#563902, BD); anti-TNFα APC (#506308, Biolegend); anti-IFNγ FITC (#505806, Biolegend); anti-IL-2 BV510 (#503833, Biolegend); anti-IL10 PerCP-Cy5.5 (#505028, Biolegend). All analyses were performed using FlowJo_V10.6.1 software (Tree Star). Gating strategy: gate cells exclude dead cells and debris based on cells size, then gate live cells based on Live-Dead NIR negative cells, then gate CD45+ cells, then gate CD45+CD3+ cells, then gate CD45+CD3+CD8+ cells and CD45+CD3+CD4+ cells. Cytokine expression was determined in the populations of CD45+CD3+cells.
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9

Apoptosis and Tumor-Infiltrating Lymphocyte Analysis

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To assess apoptosis, the cells were cultured for 24 h in RIPM 1640 medium containing normal glucose (2 g/L) or low glucose (40 mg/L) levels. The cells were centrifuged and resuspended in 0.5 ml annexin V-binding buffer (KeyGEN Biotech, China). Thereafter, 5 μl annexin V-APC and 7-AAD were added to the samples and incubated at RT for 10 min in the dark. The samples were then analyzed on a FACS Caliber flow cytometer (BD Biosciences, US).
The lymphocytes from 4T-1-injected BALB/c mice were isolated as follows: the tumor tissues from the mice were sectioned and digested with 2 mg/ml collagenase IV and 100 ng/ml DNase I (sigma) at 37 °C for 30 min. The tissues were then added to RPMI 1640 media supplemented with 10% FBS and 0.5 mM EDTA and separated by discontinuous 30–70% Percoll (GE Healthcare). After stimulation with PMA/Ionomycin and BFA (sigma) for 6 h at 37 °C, the cells were harvested for surface staining and intracellular staining (BD Pharmingen), according to the manufacturer’s instructions. The antibodies were anti-CD45-BV510, anti-CD45-APCcy7, anti-CD3-APC, anti-CD3-BV650, anti-CD4-FITC, anti-CD4-PEcy7, anti-PD-1-BV785, anti-PD-1-PE, anti-TIGIT-BV421, anti-TCR α/β-PE anti-IFN-γ-BV785, anti-IFN-γ-APC, anti-TNF-α-BV421 and anti-TNF-α-APC (BioLegend). All the data were collected by BD FACS Celesta flow cytometry and processed by Flow Jo software.
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10

Multicolor Flow Cytometry Analysis of Tumor-Infiltrating Lymphocytes

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Nine days after the treatment of MC38 tumours with indicated compounds, tumor infiltrating lymphocytes (TILs) were isolated and stained. For stimulation, cells were incubated with cell stimulation cocktail (PMA and Ionomycin) plus protein transport inhibitor (Brefeldin A and Menesin) for 4 hrs. Cells were analysed by multicolour flow cytometry (BD LSR Fortessa X-20). Antibodies: anti-CD45 BV605 (#103140, Biolegend); anti-CD3 BV875 (#100355, Biolegend); anti-CD4 BV650 (#100469, Biolegend); anti-CD8 (#100784, Biolegend); anti-FOXP3 PerCP-Cy5.5 (#563902, BD); anti-TNFα APC (#506308, Biolegend); anti-IFNγ FITC (#505806, Biolegend); anti-IL-2 BV510 (#503833, Biolegend); anti-IL10 PerCP-Cy5.5 (#505028, Biolegend). All analyses were performed using FlowJo_V10.6.1 software (Tree Star). Gating strategy: gate cells exclude dead cells and debris based on cells size, then gate live cells based on Live-Dead NIR negative cells, then gate CD45+ cells, then gate CD45+CD3+ cells, then gate CD45+CD3+CD8+ cells and CD45+CD3+CD4+ cells. Cytokine expression was determined in the populations of CD45+CD3+cells.
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