The largest database of trusted experimental protocols

11 protocols using ab180772

1

Immunoblotting Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were harvested and lysed in cell lysis buffer (Cell Signaling technology, #9803) and analyzed by Western blotting as described previously 13 (link). Antibodies against ERBB4 (4795, Cell Signaling), GRB7 (sc-13954, Santa Cruz), KRAS (ab180772, Abcam), SOS2 (ab137199, Abcam), ERK (4795, Cell Signaling), phosphorylated ERK (4795, Cell Signaling) and β-actin (1:10000, AC-74, Sigma Chemical Co) were used.
+ Open protocol
+ Expand
2

Immunoblotting Analysis of Integrin, Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Samples were solubilized with an equal volume of loading buffer (125 mM Tris/HCl, pH 6.8, 4% sodium dodecyl sulfate, 20% glycerol, 0.05% Bromophenol Blue, 5% β-mercaptoethanol) and were boiled for 10 min, then samples were separated by SDS/PAGE, followed by transferring to PVDF membranes and detecting by immunoblotting with primary antibodies against human integrin αvβ3 (Abcam, ab119992, 1:500, Cambridge, U.K.), Galectin-3 (CST, 87985, 1:1000, Boston, U.S.A.), KRAS (Abcam, ab180772, 1:200, Cambridge, U.K.), RalB (CST, 3523, 1:1000, Boston, U.S.A.), TBK1 (CST, 3504, 1:1000, Boston, U.S.A.), p-TBK1 (CST, 5483, 1:1000, Boston, U.S.A.), respectively, at 4°C overnight. Then HRP–conjugated secondary antibody (CST, Boston, U.S.A.) was incubated for 1 h at room temperature, and visualized by using ECL detection kit (CST, Boston, U.S.A.). β-actin (CST, 58169, 1:1000, Boston, U.S.A.) was used as an internal control.
+ Open protocol
+ Expand
3

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extracts were separated from cells or human tissues with RIPA buffer containing protease inhibitors. Next, 30 µg of protein extract was loaded onto 8–10% sodium dodecylsulfate–polyacrylamide gel electrophoresis gels and transferred onto nitrocellulose membranes. The membranes were hybridised with a primary antibody at 4°C overnight and incubated with a secondary antibody for 1 h at room temperature. The expression of β-actin was used as a loading control. The protein signal was visualised using an Odyssey scanner (LI-COR Biosciences, USA). The antibodies used were as follows: KRAS (1:500, Abcam, ab180772), NAP1L1 (1:1000, Abcam, ab33076), ETS1 (1:1000, CST, D8O8A), ERK1 + ERK2 (1:10,000, Abcam, ab184699), phospho-ERK1 + phospho-ERK2 (1:1000, Abcam, ab201015), Ki67 (1:5000, Abcam, ab92742), and β-actin (1:1000, Abcam, ab8226).
+ Open protocol
+ Expand
4

Western Blot Analysis of NSCLC Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
After transfection for 48 h, NSCLC cells were harvested. The cell lysates were obtained using the Radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, Shanghai, China). Cell lysates (30 μg) were subjected to 12% separating gel and then blotted to the polyvinylidene fluoride (PVDF) membrane (Bio-Rad). After blocking, the PVDF membrane was mixed with the primary antibodies, including anti-hexokinase 2 (anti-HK2, ab209847, Abcam, Cambridge, MA, United States), anti-lactate dehydrogenase A (anti-LDHA, ab101562, Abcam), anti-KRAS (ab180772, Abcam), anti-CD9 (ab92726, Abcam), anti-CD81 (ab79559, Abcam), anti-tumor susceptibility 101 (anti-TSG101, ab125011, Abcam), anti-Golgi matrix protein 130 kDa (anti-GM130, ab32337, Abcam), and anti-β-actin (anti-20272, Abcam). After washing three times using PBS-Tween 20 (PBST), horseradish peroxidase(HRP)-combined secondary antibody (ab205718, Abcam) was utilized to incubate with the membrane for 2 h at room temperature. After washing with PBST, protein signals were visualized using the enhanced chemiluminescent (ECL) system (Beyotime).
+ Open protocol
+ Expand
5

Protein Expression Analysis via Western Blotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cell lysate was prepared with a buffer containing 20 mM Tris/HCl, pH 7.4, 300 mM NaCl and 1% Triton X-100. After centrifugation (10 000 × g, 10 min, 4 °C), the supernatant was separated via 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transferred to a PVDF membrane, and subjected to western blot analysis utilizing various antibodies. Antibodies recognizing KRAS (ab180772, dilution: 1/200), Bcl-2 (ab59348, dilution: 1/500), HK2 (ab37593, dilution: 1/200), IGF1R (ab39675, dilution: 1/500), and GAPDH (ab9485, dilution: 1/2500) were purchased from Abcam (Cambridge, MA, USA).
+ Open protocol
+ Expand
6

Immunohistochemical Evaluation of Renal Cancers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry (IHC) staining was performed as previously described8 (link) with antibodies specific for KRAS (1:100, Abcam, ab180772), NAP1L1 (1:100, Abcam, ab33076), ETS1 (1:100, CST, D8O8A), and Ki67 (1:500, Abcam, ab92742). Immunohistochemically stained tissue sections were assessed separately by at least two pathologists. Three high-power fields (magnification, ×400) were randomly selected from renal cancer tissues and normal renal tissues for histological scoring. The positive degree was classified according to scoring both the proportion of positive-staining tumour cells and the staining intensities. Scores representing the proportion of positively stained tumour cells were graded as 0 (<10%), 1 (11–25%), 2 (26–50%), 3 (51–75%), and 4 (>75%). The intensity of staining was determined as 0 (no staining), 1 (weak staining = light yellow), 2 (moderate staining = yellow brown), and 3 (strong staining = brown). The staining index (SI) was calculated as the product of staining intensity × the percentage of positive tumour cells, resulting in scores of 0, 1, 2, 3, 4, 6, 8, 9, and 12. Only cells with a clear tumour cell morphology were scored.
+ Open protocol
+ Expand
7

Analyzing KRAS Protein Expression in Panc-1 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Panc-1 cells in the logarithmic growth phase were first collected and digested with 0.25% trypsin. Next, radioimmunoprecipitation assay (RIPA) buffer (Sigma-Aldrich, Shanghai, China) was applied to extract total protein. A bicinchoninic acid (BCA) protein assay kit (Pierce, Rockford, IL, USA) was employed for the quantification of protein concentrations and 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (Bio-Rad) was utilized for protein separation. After that, polyvinylidene fluoride (PVDF) membranes (Invitrogen) were employed for protein transference following the producer’s guidelines and sealed in 5% skim milk at 37°C for 2 h. The membranes were placed into a plastic bag in the next step and incubated overnight with primary antibodies against KRAS (ab180772, 1 : 500, Abcam, Cambridge, MA, USA) and GAPDH antibody (ab9485, 1 : 2000, Abcam) at 4°C. After 3 times 5-min washing with phosphate buffered saline (PBS), at room temperature, 1.5-h incubation of membranes with secondary antibody horseradish peroxidase-conjugated goat anti-rabbit IgG H&L (1 : 2000) was conducted, followed by again washing 3 times for 5 min with PBS. An electrochemiluminescent (ECL) detection system (Thermo Scientific, MA, USA) was employed for signal detection. The density of protein bands was quantified or analyzed using Quantity One v4.6.2 software (Bio-Rad).
+ Open protocol
+ Expand
8

Western Blot Analysis of Ras-Raf-Erk Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
20 μg of protein was added to SDS-PAGE as quantified. After protein separation, the membrane was transferred using activated PVDF membrane (Thermo Fisher, 22,860). The membrane was incubated with specific antibodies. Subsequently, the PVDF membrane was incubated with the HRP secondary antibody at room temperature. The antibodies used were as follows: Ras (abcam, ab180772), Raf (abcam, ab200653), Erk1/2 (Thr202/Tyr204) (Cell Signaling Technology, 9101S), p-ERK1/2 (Thr202, Tyr204) (Thermo Fisher, 14–9109-82) and GAPDH (Cell Signaling Technology, 2118). They were diluted according to the manufacturer’s instructions.
+ Open protocol
+ Expand
9

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The extraction of proteins from tissues or cells was implemented via radioimmunoprecipitation assay (RIPA, Sangon Biotech, Shanghai, China). Then, the protein samples were subjected to SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (ThermoFisher, Waltham, USA). After the block by 5% non-fat milk, Western blot analysis was applied to determine the protein expression [14 (link)]. The membranes were incubated with the diluted primary antibodies (1:2000) and secondary antibodies (1:5000), respectively. Finally, the protein signals were achieved using an enhanced chemiluminescence (Amersham Pharmacia, Piscataway, USA). Primary antibodies against Ras (1:1,000, ab180772), phosphor-ERK1/2 (p-ERK1/2, 1:1,000, ab47339), ERK1/2 (t-ERK1/2, 1:3,000, ab196883), PCNA (1:2,000, ab18197), OCT4 (1:2,000, ab109183), hexokinase 2 (HK2) (1:2,000, ab227198), HMGA2 (1:2,000, ab97276), β-actin (1:2,000, ab8227), GAPDH (1:2,500, ab9485) and secondary antibodies (1:2,000, ab205718) were all obtained from Abcam. ImageJ software was used to evaluate the band density by densitometric analysis.
+ Open protocol
+ Expand
10

Immunoblotting of Cell Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein samples were boiled in SDS/β-mercaptoethanol sample buffer, and 20 μg of each sample was loaded into each lane of 4–12% polyacrylamide gels. After separation by electrophoresis, the proteins in the gels were transferred onto PVDF membranes (Amersham Pharmacia Biotech, St. Albans, Herts, UK). The membrane was incubated with rabbit anti-CDK6 polyclonal antibody (ab151247, Abcam, Cambridge, MA, USA) or rabbit anti-EZH2 monoclonal antibody (ab191080, Abcam, Cambridge, MA, USA) or rabbit anti-PDL1 polyclonal antibody (ab205921, Abcam, Cambridge, MA, USA) or rabbit anti-TAK1 polyclonal antibody (ab109526, Abcam, Cambridge, MA, USA) or rabbit anti-KRAS polyclonal antibody (ab180772, Abcam, Cambridge, MA, USA), or rabbit anti-FGF9 polyclonal antibody (ab71395, Abcam, Cambridge, MA, USA) or mouse anti-β-actin monoclonal antibody (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA) over night at 4 °C. The specific protein-antibody complex was detected by using horseradish peroxidase conjugated goat anti-rabbit or rabbit anti-mouse IgG. Detection by the chemiluminescence reaction was carried using the ECL kit (Pierce, Appleton, WI, USA). The β-actin signal was used as a loading control.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!