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21 protocols using hla dr

1

Phenotypic Characterization of Engineered Cell Sheets

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The engineered cell sheets were fixed in 10% neutral buffered formalin and embedded in paraffin. The tissue sections were used for immunofluorescent staining with CD19 (Cat # NBP2-25196), CD73 (Cat # NBP2-25237) (NovusBIo, CO, United States), CD29 (Cat # ab134179), HLA-A (Cat # ab52922), HLA-DR (Cat # ab92511) (Abcam, MA, United States), and Oct3/4 (Cat # NB-100-2379SS) (Novus Biologicals LLC., Littleton, CO, United States). Alexa Fluor 488 donkey anti-rabbit conjugated secondary antibodies and Alexa Fluor 488 donkey anti-mouse conjugated secondary antibodies (Invitrogen, Carlsbad, CA, United States) were used. Propidium iodide (Invitrogen, Carlsbad, CA, United States) was used to stain nuclear DNA. An EVOS M5000 microscope was used to analyze the slides (Invitrogen, Carlsbad, CA, United States).
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2

Immunophenotyping of Adipose-Derived Mesenchymal Stem Cells

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aBMSCs at passage 3 were trypsinized, washed, and resuspended in phosphate-buffered saline (PBS; Gibco) at a concentration of 1 × 105 cells/mL. The cells were subsequently immunolabeled with mouse monoclonal anti-human antibodies specific for the following: CD14, CD34, CD44, CD90, CD106, and HLA-DR (Abcam, Cambridge, MA, USA). Mouse isotype antibodies served as controls. The cells were then washed again with PBS and fixed in 2% paraformaldehyde, after which the immunolabeled cells were detected by flow cytometry (BD Biosciences, NJ, USA).
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3

Immunophenotyping of Macrophages

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Cell samples were stained with antibodies (CD68 1:100, Human Leukocyte Antigen-DR, HLA-DR 1:1000, CD206 1:1000; Abcam, USA). Cells were stained with Alexa Fluor 488-conjugated (for CD68 and HLA-DR) or PE-conjugated (for CD206) second antibodies (1:500, Beyotime, China). Cytoflex cytometer (BD Biosciences, USA) was applied for detection. All analyses were performed using FlowJo software. The percentage of positive cells concerning macrophages markers expression in this section was calculated.
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4

Immunofluorescence Analysis of CRC Tissue

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The Paraffin-embedded specimens were sectioned at 3 μm thickness. After dewaxing, antigen retrieval was made in the microwave of citrate buffer. The slices were then blocked with 3% BSA and stained overnight at 4 °C with the primary antibodies against human Wnt5a (1:100, Abcam), CD68 (1:100, Abcam), HLA-DR (1:100, Abcam), CD163 (1: 100, Abcam), IL-10 (1:100, Abcam). Subsequently, specimen sections were incubated with fluorochrome-conjugated secondary antibodies. Nucleus staining was performed using Diaminophenylindole (DAPI).
Before immunofluorescence staining, all samples were stained with hematoxylin and eosin (H&E) to ensure that all specimens contained representative CRC tissue. For each section, at least 6 fields of view (at 200× magnification) were used to calculate positive cells stained with indicated antibody. A quantitative analysis was performed to determine the numbers of infiltrating CD68+ and Wnt5a+CD68+ cells. All of the above-mentioned cells were counted manually. Only cells with macrophage-like morphology were included. Cell counting was carried out in a blinded manner by two research fellows familiar with histomorphology and immunofluorescence staining. If there was a disagreement, the analyses would be discussed with the authors.
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5

Characterization of Mesenchymal Stem Cells

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Bone marrow mesenchymal stem cells (BMSCs, Institute of Hematology, Peking University People's Hospital, Beijing, China) and human placental mesenchymal stem cells (HPMSCs, Boya Stem Cell Bank, Beijing, China) were placed in a complete medium of DMEM/F-12 (GIBCO, USA) containing 10% of fetal bovine serum (Hyclone, USA) and 1% penicillin-streptomycin (GIBCO, USA), before being transferred to a cell culture incubator. All cells were cultured at 37°C in a humidified atmosphere containing 5% CO2. The medium was changed once every two days (2 d). The cell growth status was observed under a microscope. When the confluence density of the cells reached 80–90%, they were passaged using routine subculture techniques, and some cells were cryopreserved at the same time. The cells were passaged continuously, and subsequent experiments were performed using P6–P9 generations of the cells. The content of MSC characterization included induction of adipogenic differentiation, induction of osteogenic differentiation, and the presence of surface markers of MSCs including CD105, CD73, CD34, CD11b, CD19, CD45, and HLA-DR (Abcam, USA) (Figure 1(a)).
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6

Automated Immunohistochemistry Staining Protocol

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Immunohistochemistry (IHC) was performed using an automated immunohistochemical stainer (Ventana Medical Systems, Inc., Tucson, AZ, USA) according to the manufacturer’s protocol. The sections were deparaffinized, pretreated with cell conditioning solution (CC1; Ventana), and subjected to ultraviolet radiation to abrogate endogenous peroxidase activity. The primary antibodies were diluted in Dako antibody diluent (DakoCytomation, Glostrup, Denmark) with background-reducing components and targeted the following proteins: CD68 (1:1,000; mouse, Dako), CD163 (1: 2,000; rabbit, Abcam, Franklin Lakes, NJ, USA), HLA-DR (1:10,000; mouse, Abcam), caspase-3 (1:500; rabbit, Cell Signaling Technology, Inc., Danvers, MA, USA) and FOXP3 (1:50; mouse, Abcam). The sections were incubated with primary antibodies at room temperature for 32 minutes and then hybridized with horseradish peroxidase-conjugated secondary antibody (Ventana) for 8 minutes. The reaction was developed with diaminobenzidine (DAB; Dako) for 5 minutes and the slides were counterstained with hematoxylin II (Ventana) for 4 minutes and a bluing reagent (Ventana) for 4 minutes. These sections were finally observed under a light microscope (BX50; Olympus).
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7

Immunophenotyping of Mesenchymal Stem Cells

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The MSC immunophenotype was determined by flow cytomety using the Navios Cytometer (Beckmann Coulter, IN, USA) and FlowJo analysis software (version 7.4.1. TreeStar Inc., CA, USA). The cell surface antigens CD44, CD49e, CD13, CD90, CD73, CD29, CD86, CD105, HLA-ABC, CD14, CD19, CD34, CD45, CD80, and HLA-DR were analyzed and at least 5000 cells were included in the analysis. All antibodies were purchased from BD Biosciences (CA, USA) except CD80 (Beckmann Coulter) and HLA-DR (Abcam, UK). The proportion of non-viable cells were determined during analysis by staining the cells with propidium iodide (50 μg/ml in PBS, BD Biosciences).
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8

Immunophenotyping of Human UCMSCs

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hUCMSCs immunophenotypes were evaluated. Harvested cells were labeled using mouse anti-human monoclonal antibodies: fluorescein isothiocyanate (FITC)-conjugated CD105 (20 μl/106 cells), CD90 (5 μl/106 cells), CD73 (5 μl/106 cells), CD14 (20 μl/106 cells), CD34 (10 μl/106 cells), CD45 (10 μl/106 cells), and HLA-DR (1 μl/106 cells) (Abcam Inc., MA, USA). FITC-labeled mouse anti-human immunoglobulin G1 (IgG1) was used as the homotype control. MSC phenotypes were identified using a flow cytometer (BD Biosciences, NJ, USA).
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9

Multiparametric Immunohistochemical Analysis

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Tissue samples were fixed in formalin, embedded in paraffin, and sectioned. These specimens were incubated with antibodies: CD3 (clone: A045229–2; DAKO), CD4 (clone: CM153A; Biocare), CD19 (clone: CM310 A, B; Biocare), CD8 (clone: ab85792; Abcam), CD31 (clone: 3528; Cell Signaling Technology), CD68 (clone: ab955; Abcam), Cleaved caspase-3 (clone: 9664; Cell Signaling Technology), GZMA (clone: LS-C312742; LSBio), CD28 (clone: ab243228; Abcam), CD45RA (clone: 158–4D3; Novus Biologicals), vimentin (clone: 5741; Cell Signaling Technology), α-SMA (clone: 19245; Cell Signaling Technology), pan-CK (clone: ab27988; Abcam), AQP5(clone: ab92320; Abcam), HLA-DR (clone: ab20181; Abcam) and SLAMF7 (clone: HPA055945; Sigma Aldrich) followed by incubation with secondary antibody using an OpalTM Multiplex Kit (Perkin Elmer). The samples were mounted with ProLong™ Diamond Antifade mountant containing DAPI (Invitrogen).
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10

Immunoblot Analysis of Cell Proteins

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The proteins from the cells were resolved on SDS-PAGE gels, transferred onto nitrocellulose membranes, and immunoblotted with antibodies against HLA-DR, ICAM-1, CD80, IL-1α, IL-6, NFκB, CCL2, and β-actin (Abcam, Cambridge, MA, USA). Secondary antibodies were then applied, and the signals were detected using a ChemiDoc-It 600 Imaging System (UVP, Upland, USA).
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