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28 protocols using facscanto plus

1

RAW 264.7 Cell Dissociation and FACS Analysis

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RAW 264.7 cells were enzymatically dissociated with 0.25% trypsin, harvested, and resuspended into single-cell suspension in cold FACS buffer (PBS with 2% FBS). The cells were then analyzed using FACS Canto Plus (BD Biosciences, Mount View, CA).
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2

Isolation and Analysis of Cardiac Immune Cells

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Mice were deeply anesthetized with 2.5% isoflurane and intracardially perfused with ice-cold PBS to exclude blood cells. The hearts were dissected, cut into small pieces using fine scissors, and digested in PBS with 1 mg/ml type II collagenase (Worthington Biochemical Corporation, Lakewood, NJ, USA) and 1 mg/ml type IV collagenase (Worthington Biochemical Corporation) for 20 minutes at 37°C with gentle agitation. Subsequently, the hearts were repeatedly aspirated with a pipette, passed through a 70-μm cell strainer, and washed with PBS. The single cells suspensions were incubated with anti-CD16/32 antibody (93, eBioscience) on ice for 15 min. Subsequently, the cells were washed once and incubated with the following antibodies at 4°C for 30 min: anti-CD45-PE (30-F11, eBioscience), anti-CD11b-BV605 (M1/70, BD Bioscience), anti- F4/80-APC (BM8, eBioscience), anti-Ly6G-BV510 (1A8, BioLegend), anti-CD3-BV421 (145-2C, BD Bioscience), anti-CD19-FITC antibodies. The results were displayed as the percentage compared to single cells. Flow cytometric analysis were performed on a FACS Canto plus (BD Biosciences) and analyzed using FlowJo software (Tree Star).
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3

Multiparametric Flow Cytometry of CAR-T Cells

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Flow cytometry was performed on a FACSCanto Plus instrument (BD Biosciences) and FlowJo v.10 (FlowJo, LLC) was used for data analysis. All antibodies were purchased from BD Biosciences. CAR-T cells were detected after staining with APC-cy7-labeled mouse anti-human CD3 antibody, FITC-labeled mouse anti-human CD8 antibody, Alexa Fluor 700-labeled mouse anti-human CD8 antibody, BV421 labeled mouse anti-human CD4 antibody, BV605-labeled mouse anti-human CD45RO, PE-cy7-labeled mouse anti-human CCR7, Alexa Fluor 700-labeled mouse anti-human CD27, PE-cy5-labeled mouse anti-human CD95, and Alexa Fluor 647-labeled goat anti-mouse IgG (Fab specific) F(ab′)2 antibody (Jackson ImmunoResearch).
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4

Multicolor Flow Cytometry for AML Diagnosis

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BM aspirate samples were collected in EDTA anticoagulant and processed within 24 h of collection. After incubation with monoclonal antibodies for 20 min at room temperature, erythrocytes were lysed with ammonium chloride (PharmLyse™, BD Biosciences, San Diego, CA, USA) at room temperature for 10 min using a standard lysing/washing technique. An eight-color FCM analysis was performed on a FACS Canto Plus flow cytometer (BD Biosciences, San Jose, CA, USA), which was standardized daily using CS&T beads, and data were analyzed. The panel of antibodies used was CD45 (for identifying blasts, was added in all of the tubes), CD2, CD3, CD4, CD5, CD7, CD8, CD10, CD11b, CD13, CD14, CD15, CD16, CD19, CD20, CD22, CD33, CD34, CD38, CD56, CD64, CD117, HDL-DR, MPO, CD79a, and cCD3. Some cases of AML, such as AML M6, CD235a and CD71, as well as AML M7, CD41, CD42b, and CD61, were also included in the panel. The antibody panel is shown in Supplemental Table S1. Instrument alignments, sensitivities, and spectral compensation were verified by standards, calibrators, procedural controls, and normal peripheral blood samples prior to processing of patient samples.
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5

Flow Cytometric Enumeration of pTregs

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PBMCs were separated from blood samples using Ficoll (GE Healthcare, Chicago, IL) and centrifugation. pTregs were counted by flow cytometry (FACS Canto plus, BD Biosciences, Franklin Lakes, NJ) using a fixed staining protocol of 5 μL antibody (Anti-human CD4 (RPA-T4) FITC, 11-0049-41; Anti-human CD25 (BC96) PE, 12-0259-41; Anti-human CD3 (UCHT1) APC, 17-0038-41; Anti-human CD127 (EBIORDR5), PERCP-CYAN, 45-1278-41; eBioscience, San Diego, CA) diluted in 100 μL PBS. Flow cytometric data were analyzed using FlowJo (Version 10.6.2, BD Biosciences) (Fig. S6).
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Flow Cytometric Analysis of VSV Infection

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After being infected with VSV (dG)-GFP/VSV (dG)-GFP-intein for 24 h, cells were collected and washed successively with PBS and resuspended in PBS, and data were acquired on a FACSCanto Plus (BD Biosciences, United States). At least 200,000 events were collected for each sample, and the data were analyzed with FlowJo 10 software.
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7

Apoptosis Analysis by Flow Cytometry

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Apoptotic cells were analyzed by flow cytometry after staining with FITC-Annexin V and propidium iodide (cat no. 640914; BioLegend, Inc.). Briefly, cells were washed twice with cold Cell Staining buffer, and then resuspended in Annexin V Binding buffer at a concentration of 5x106 cells/ml. Add 5 µl of FITC-Annexin V and 10 µl of propidium iodide solution into 100 µl of cell suspension, and then the cells were gently vortexed and incubated for 15 min at 25˚C in the dark. Add 400 µl of Annexin V Binding Buffer to each tube and then the cells were subjected to flow cytometry analysis using FACSCanto Plus instrument (BD Biosciences). The results were analyzed using FlowJo software (v.10.4.1; Tree Star, Inc.).
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8

Multiparametric Flow Cytometry Analysis

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Flow cytometry was performed on a FACSCanto Plus instrument (BD Biosciences) and FlowJo v.10 (FlowJo, LLC) was used for data analysis.
Antibody list: APC-conjugated CD3 antibody (BD Pharmingen 555340); V450-conjugated CD4 antibody (BD Pharmingen 560650); PE-Cy7-conjugated CD8 antibody (BD Pharmingen 560960); FITC-labeled goat anti-mouse IgG(H+L) antibody (Sigma); FITC-conjugated IL13Ra antibody (BD Biosciences); and APC-labeled anti-CD107a-APC antibody (BD Biosciences).
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9

Platelet Activation Marker Expression

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The expression of platelet surface markers CD62p and PAC-1 were examined using flow cytometry (BD, FACSCanto plus, USA). The protocol has been previously described by Morel et al. [21 (link)]. Briefly, a part of whole blood samples were activated by ADP (20 µM) at 37 °C for 10 min. Resting and activated samples were fixed in 1% paraformaldehyde (PFA) at 37 °C for 1 h and stained with the corresponding antibodies: anti-CD61/PerCP, anti-CD62p/PE and anti-PAC-1/FITC (BD,San Diego, CA, USA) in dark at room temperature for 30 min. Then, samples were diluted in PBS until further use. Flow cytometry analysis was performed on 10,000 platelets (CD61/PerCP-positive). The results were presented as percentages of CD62p- and PAC-1-positive platelets in the samples.
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10

Basophil Activation Test for IgE-Mediated Allergy

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BAT is used for the in vitro diagnosis of IgE-mediated allergies. C-C chemokine receptor (CCR) 3 and cluster of differentiation (CD) 63 expressions have been considered as an indicator of basophil activation for measuring specific IgE.22 (link)23 (link) Basically, peripheral blood samples from cat-allergic volunteers were collected on EDTA within 24 hours. Leukocytes were isolated by means of red blood cell lysis and washed twice with PBS. Later, the cells were stimulated with 100 µL of activation buffer supplemented with either anti-IgE or rCat-NPC2 (final concentration, 10 µg/mL) at 37°C for 30 minutes. The stimulation was stopped by adding 900 µL of cold PBS containing 2.5 mM EDTA, followed by centrifugation at 4°C for 5 minutes. After removal of the supernatant, the pellets were resuspended with 100 µL of staining cocktail containing 5 µL of anti-human Alexa647-conjugated CD63 antibody (561983, BD Biosciences, Frankin Lakes, NJ, USA) and 5 µL of phycoerythrin-conjugated CCR3 antibody (184123, eBioscience Inc., San Diego, CA, USA) and thereafter incubated for 20 minutes on ice. Basophil expressions of CCR3 and CD63 were evaluated using a FACSCanto Plus and analyzed using the build-in Diva software (BD Biosciences).
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