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3 protocols using hoxa1

1

Allicin Modulates circEIF4G2 in Apoptosis

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Main reagents: Allicin (95% purity) from Nanjing Zelang Medical Technology Co., Ltd. We prepared different allicin working solutions at 20, 40, and 80 μM concentrations by using the DMEM/F‐12 medium. Furthermore, cell apoptosis, cell counting kit‐8, and two‐step reverse transcription polymerase chain reaction assay kits purchased from Nanjing KeyGEN BioTech Co., Ltd., Beyotime Institute of Biotechnology in Jiangsu and Beijing Tiangen BioTech Co., Ltd., respectively. Primers and internal reference (glyceraldehyde 3‐phosphate dehydrogenase [GAPDH]) were synthesized from Sangon Biotech Co., Ltd., Shanghai. HOXA1, AKT, and primary anti‐mTOR antibodies were all purchased from Abcam, and si‐negative control (NC) and si‐circEIF4G2 were designed and synthesized from Nanjing KeyGEN BioTech Co., Ltd.
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2

Western Blot Analysis of Protein Expression

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Total cellular proteins were isolated using RIPA buffer (Thermo Scientific) and quantified with a BCA Protein Assay Kit (Pierce, Rockford, IL, USA). Protein lysate was then separated by 10% SDS‐PAGE, followed by transfer onto PVDF membrane (Invitrogen). After blocking with 5% skim milk in TBST at room temperature for 2 hours, the membrane was incubated at 4°C overnight with specific primary antibodies: HOXA1 (1:1000, Abcam), cyclin D1 (1:1000, Abcam), c‐Myc (1:1000, Abcam), β‐catenin(1:1000, Abcam), p‐GSK3β (1:1000, Abcam), E‐cadherin (1:2000, Abcam), N‐cadherin(1:2000, Abcam), Vimentin (1:1000, Abcam) and GAPDH (1:1000, Abcam). After washing with TBST, the membrane was incubated with HRP‐labeled secondary antibody (1:3000, Abcam) at room temperature for 2 hours. GAPDH was used as an internal control. Finally, the bands for proteins were visualized using ECL western blot detection reagents (Beyotime).
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Western Blot Analysis of Protein Expression

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Total protein was extracted from tissues and cells using radioimmunoprecipitation assay buffer (RIPA buffer, Beyotime, China) with protease inhibitors (Beyotime). Protein concentration was then measured using a BCA Protein Assay Kit (Beyotime). Total protein was separated by 10% SDS-PAGE (Beyotime) and transferred to a PVDF membrane (Millipore, Billerica, MA, USA) by wet transfer. After blocking for 2 hrs with TBST solution containing 5% skimmed milk, the membranes were incubated with specific primary antibodies overnight at 4°C. The following morning, the membranes were incubated with a corresponding secondary antibody for 2 hrs at room temperature. Finally, the intensity of the protein bands was measured with C300 imaging system (Azure Biosystem, USA) by enhanced chemiluminescence (ECL, Thermo Scientific, USA). The relative-integrated density was analyzed using ImageJ software based on GAPDH as an internal control. The primary antibodies included HOXA1 (1:1000, Abcam, Eugene, USA), E-cadherin (1:1000, Cell Signaling Technology, CA, USA), N-cadherin (1:1000, Cell Signaling Technology), CyclinD1 (1:1000, Cell Signaling Technology) and GAPDH (1:10,000, Proteintech, Chicago, IL, USA). We also used an HRP-conjugated secondary antibody (1:2000, ZSGB-Bio Origene, Beijing, China). All assays were performed in triplicate.
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