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Sybr green real time pcr kit

Manufactured by Agilent Technologies
Sourced in United States

The SYBR Green real-time PCR kit is a laboratory instrument designed for the amplification and detection of DNA sequences in real-time using the SYBR Green I dye. The kit provides reagents and protocols for conducting quantitative real-time PCR experiments.

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4 protocols using sybr green real time pcr kit

1

Quantification of Sirt1 Gene Expression

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Total RNA was extracted from the tissue samples using TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc. Waltham, MA, US). Subsequently, complementary DNA was synthesized using a reverse transcriptase kit (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturers’ instructions. The relative expression levels of mRNA were determined using a SYBR Green real-time PCR kit (Agilent Technologies, Inc., Santa Clara, CA, USA) and normalized to GAPDH. RT-PCR was performed using the ABI 7500 Fast Real-Time PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc., Waltham, MA, USA) and the following gene-specific primers: GAPDH sense: 5′-TGCCATCAACGACCCCTTCA-3′; GAPDH anti-sense: 5′-TGACCTTGCCCACAGCCTTG-3′; Sirt1 Sense: 5′-GAGGCAGTGCAGCATGTAGT-3′, Anti-sense 5′-GATGATTCCCTCGGTCAGAA-3′. All primers were designed using the National Center for Biotechnology Information Primer-BLAST tool. PCR was performed under the following conditions: Denaturation at 50°C for 2 min, followed by 35 cycles of 94°C for 15 s and 56°C for 45 s. Gene expression was normalized to internal controls and fold changes were calculated using relative quantification (2−ΔΔCt).
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2

qPCR Analysis of mRNA Levels

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Isolated RNA was reverse-transcribed with the cDNA synthesis kit (Agilent Technologies), according to the manufacturer’s instructions. The resulting cDNA (equivalent to 500 ng of total RNA) was amplified using the SYBR Green real-time PCR kit and detected on a Stratagene Mx3005 P (Agilent Technologies). qPCR was performed using forward and reverse primers (sequences available upon request). On completion of the PCR amplification, a DNA melting curve analysis was carried out in order to confirm the presence of a single amplicon. Actb was used as an internal reference gene in order to normalize the transcript levels. Relative mRNA levels (2-DDCt) were determined by comparing (a) the PCR cycle thresholds (Ct) for the gene of interest and Actb (DCt) and (b) DCt values for precursor cells and monocyte control group (DDCt).
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3

Quantitative Analysis of Colon Gene Expression

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The RNA was extracted from colon that were sampled at day 14. Colonic RNA was then reverse-transcribed with the AffinityScript QPCR cDNA Synthesis Kit according to the manufacturer’s instructions (Agilent Technologies). The resulting cDNA (equivalent to 5 ng of total RNA) was amplified using the SYBR Green real-time PCR kit and detected on either MxPro or AriaMx (Agilent Technologies). RT-qPCR analysis was performed with the forward and reverse primers that were designed using Primer 3 software (sequences available upon request). On completion of the qPCR amplification, a DNA melting curve analysis was carried out in order to confirm the presence of a single and specific amplicon. Actb were used as an internal reference gene in order to normalize the transcript levels of each genes of interest. Relative mRNA levels (2- 2ΔΔ Ct) were determined by comparing (a) the PCR cycle thresholds (Ct) for Actb and the genes of interest ( Δ Ct) (b) Δ Ct values for treated and control groups ( ΔΔ Ct).
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4

Quantifying Gene Expression via qPCR

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RNAs were extracted using the RNEasy mini kit (Qiagen). According to the manufacturer’s instructions, isolated RNA was reverse-transcribed with the cDNA synthesis kit (Agilent Technologies). The resulting cDNA (equivalent to 500ng of total RNA) was amplified using the SYBR Green real-time PCR kit and detected on a Stratagene Mx3005 P (Agilent Technologies). qPCR was conducted using forward and reverse primers (sequences available upon request). The relative abundance of gene expression was assessed using the 2−ΔΔCt method. Actb was used as an internal reference gene in order to normalize the transcript levels.
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