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10 protocols using cd3 percp

1

Multi-Color Flow Cytometry Immunophenotyping

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Antibody combination panels for four or five color immune-staining were as follows:

CD3PerCP, CD4 FITC, CD25APC, and rat Foxp3PE (all from eBioscience, San Diego, CA).

CD4 PercpCy5.5, HLA-DR APC, CD127 Pac Blue and rat Foxp3 PE (eBioscience, San Diego, CA).

CD4 PercpCy5.5, CCR5 FITC, CXCR4 APC (Biolegend, San Diego, CA) and Foxp3 PE.

CD4 PercpCy5.5, HIV-1 p24 FITC (Beckman Coulter, Brea, CA), Bcl-2 PE (BD Biosciences, San Jose, CA) and Foxp3 e-fluor660 (eBioscience).

CD4 PercpCy5.5, CD127 Pac Blue, Foxp3 PE, HIV-1 p24 FITC and IFN-γ Alexa Fluor 647 (Biolegend).

Isotype antibodies used included: IgG2a APC, IgG1 Pac Blue, rat IgG2a PE, IgG2a FITC, rat IgG2a AP, IgG1 FITC, IgG1 PE, IgG2a e-fluor660, and IgG1 Alexa Fluor 647.
The protocol and buffer set from eBioscience were used for all experiments involving intracellular staining. All samples were fixed and acquired within 1h of completion of staining, and analysis was by Miltenyi MACSQuant Flow cytometer.
Data were analyzed by FlowJo software (Treestar Inc, Ashland, OR) at the completion of study.
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2

Flow Cytometry Analysis of Murine Immune Cells

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Animals were sacrificed and the spleens and kidneys were collected for flow cytometry analysis. The monoclonal antibodies used for splenic flow cytometry were CD4-PE, CD3-PE-cy7, Foxp3-FITC, CD69-percp-cy7, B220-PE-cy7, CD21-FITC, CD23-PE, CD11c-PE-cy7, CD11b-APC, F4/80-PE, CD86-FITC, and F4/80-PErCP. The monoclonal antibodies used for renal flow cytometry were CD4-PE, CD3-Percp, Foxp3-FITC, CD45-APC-cy7, CD11b-FITC, CD11c-PE-cy7, F4/80-PE, and Gr-1-Percp (eBioscience, Hanover Park, IL, USA). Cell counting was performed by using a Cellometer® automated cell counting system (Sigma-Aldrich, St Louis, MO, USA) for absolute cell numbers. The Novocyte flow cytometer system (ACEA Bioscience Inc., San Diego, CA, USA) was used for flow cytometry, and analysis was performed as described [11 (link)]. Data were analyzed using Novocyte software (ACEA Bioscience Inc.). At least 200,000 events were acquired for each analysis.
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3

Multicolor Flow Cytometry Immunophenotyping

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Cultured T-cell lines were stained with fluorochrome-conjugated monoclonal antibodies against CD3 (1 μg), gamma-delta TCR, CD4, CD8, CD19, NK1.1 (0.5 μg each) for subset analysis (all antibodies from BD Bioscience, San Diego, CA). Cells were stained with FOXP3 Alexa488 (1 μg), CD3 PerCP (1 μg) and CD4 APC (0.5 μg) for T-regulatory cells (Treg) analysis according to FOXP3 staining protocol (eBioscience, San Diego, CA). Data acquisition was performed on a FACS Canto flow cytometer (BD Biosciences) and was analyzed using the FlowJo software (Tree Star, OR).
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4

Flow Cytometric Analysis of Immune Cells

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Flow cytometry was performed on single cell suspensions of splenic, iliac lymph node, bladder and prostate tissues. Tissues were made into single cell suspensions by passing through 40 μm mesh filter membranes to remove debris and washing with 2% FCS (HyClone) in PBS (Gibco). Samples were then fixed and permeabilized using fixation-permeabilization buffers (eBioscience Cat. Numbers 8222-49 and 8333-56), according to manufacturer’s instructions. Following this cells were stained with the following mouse antibodies (Ly6G-FITC, Ly6C-PE, IL4-PE, B220-PE, CD3-PerCp, CD86-PerCp, CD11b-APC, IL17A-APC (eBioscience), CD8-FITC, IFNγ-FITC, CD4-PerCp, CD4-APC (Biolegend)), and run on an Accuri benchtop C6 cytometer. Results were analyzed using FlowJo software and statistics generated using Prism software from GraphPad.
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5

Multiparameter Flow Cytometry Analysis

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Analyses were performed with a FACS Canto II using FACS Diva (BD Biosciences, San Jose, CA, USA) and FlowJo software (TreeStar, Inc., Ashland, OR, USA). The following anti-human antibodies were used: HLA-DR-BV421™, HLA-DR-APC (clone L243), CD80-Alexa647, CD3-APC-Cy7, CD16-PE (clone 3G8), CD15-PE-Cy7, CD15-PerCp-Cy5, CCR3-APC and PerCP-labelled CD14, CD19, CD56, CD123, and CCR3 (all from Biolegend, San Diego, CA), CD4-PE and CD86-PE, CD45-FITC (all from BD Biosciences) and CD3-PerCP and CD8-PerCP (both from eBioscience Inc., San Diego, CA). Viability was determined by using the Fixable Viability Dye eFluor® 780 (eBioscience Inc.). Annexin V-FITC (BD Pharmingen, San Jose, CA, USA) was used to determine cells undergoing apoptosis. For internalization experiments, cells (1x106/ml) were incubated with and without pHrodo-labelled Bet v 1 (1.5 μg/ml) in the presence of GM-CSF/IFN-γ/IL-3.
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6

Spleen and CNS Immune Cell Analysis

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Spleen cells were collected; the red blood cells were lysed with buffer containing NH4Cl, and adjusted to 106 cells/tube. CNS-extracted cells were plated at 5 × 105 cells/well and stimulated with MOG (125 μg/mL) and with C. albicans (5 yeasts/1 cell). After incubation at 37°C for 48 h, cells were collected and stained. Spleen and CNS-extracted cells were blocked with rat serum 1% for 20 min to prevent nonspecific binding via Fc receptor. After Fc blocking, cells were stained with 0.2 μg of PerCP-conjugated anti-mouse CD3 and 0.25 μg of FITC-conjugated anti-mouse CD4 for 20 min at 4°C. Intracellular FoxP3 transcription factor analysis was performed only in spleen samples by using CD3-PercP, CD4-FITC plus 0.13 μg of APC-conjugated anti-mouse CD25 and 0.2 μg of PE-conjugated anti-mouse FoxP3 and staining set (eBiosciences, San Diego, CA, USA) according to manufacturer's instructions. After staining, the cells were washed, resuspended in FACS buffer, and fixed in paraformaldehyde 1%. Analysis was performed using a FACSCanto II (BD) from Bioscience Institute (Botucatu, SP, Brazil) and the data were analyzed with FlowJo software (TreeStar, Ashland, OR, USA).
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7

Surface and Intracellular Staining of MDSCs and Tregs

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Cell surface staining with antibodies conjugated with fluorochromes was performed as previously described.26 (link) The following anti-human antibodies conjugated with fluorochromes were purchased from eBiosciences (San Diego, CA): CD14-FITC, CD4-FITC, CD11b-PE, CD25-PE, CD3-PerCP, CD33-PercpCY5.5, HLA-DR-APC, FoxP3-APC, and isotype-matched control antibodies conjugated with fluorochrome. Intracellular staining (ICS) with anti-human FoxP3-PE was performed using the FoxP3 staining buffer set (eBiosciences, San Diego, CA) according to the manufacturer's instructions. As a heterogeneous cell population, human MDSCs could be further divided into 2 subsets, monocytic (M-MDSC, CD14+) and granulocytic (G-MDSC, CD14/CD15+).12 (link),18 (link),20 (link)–23 (link) Given that G-MDSCs are unavailable in Ficoll-prepared PBMCs, we set the gating strategy for M-MDSCs: CD33+CD11b+/CD14+HLA-DRLow. Meanwhile, the gating strategy for Tregs was CD3+CD4+CD25+FoxP3+. Cells were collected on a FACSCalibur (BD). The data were analyzed using FlowJo software (TreeStar, San Carlos, CA). Appropriate isotype controls were used at the same protein concentration as the test antibodies, and control staining was performed during every FACS.
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8

Differentiation Status of BTLA+ and BTLA- T cells

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To determine the differentiation status of BTLA + and BTLA -T cells, we stained cells with a combination of CD3-PerCP, CD8-APC-Cy7, BTLA-APC, CD45RA-FITC (BD Biosciences), CD45RO-PE (BD Biosciences), and another combination of CD3-PerCP, CD8-APC-Cy7, BTLA-APC, CCR7-FITC (eBioscience) and CD62L-PE (BD PharMingen) simultaneously.
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9

Quantifying Antigen-Specific CD8+ T cells

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Splenocytes were treated with anti-CD16/CD32 and labelled with PE-conjugated DCT180-188 peptide-loaded MHC-I tetramer (Baylor College), PerCP-CD3, and FITC-CD8α (eBioscience) for 30 minutes in FACS buffer (1% PBS, 5% fetal calf serum, 2.5% NaZ). For ELISpot analyses, the exact number of DCT-MHC-I tetramer+/CD8+ T cells were calculated from flow cytometry proportion results and added to an IFNγ ELISpot following manufacturer’s instructions (Mabtech).
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10

Multiparameter Flow Cytometry of NK Cells

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Aliquots of 1 × 106 NK cells were analyzed for surface markers using a panel of prediluted fluorochrome-conjugated anti-human monoclonal antibodies. FITC-CD3, PE-Cy™7-IFNγ, FITC-CD107a, PE-NKp44, and PerCP-Cy™5.5-NKG2D were purchased from BD Biosciences. PerCP-CD3, PE-CD253/TRAIL, Alexa Fluor-700-TNFα, APC-CD56, APC-NKp30, PE-Cy7-NKp46, and Alexa Fluor-700-TIM-3 were purchased from eBioscience (San Diego, CA, USA). PE-Galectin-9 was purchased from Miltenyi Biotec (Bergisch Gladbach, Germany). Samples were run on a FACSAria II dual-laser 8-color cytometer (BD Biosciences, Europe), and data were analyzed with FACSDiva software 6.1.3.
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