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10 protocols using pdgf b

1

Recombinant Protein Preparation Protocol

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The following recombinant human proteins were used: interleukin-24 (IL-24), platelet-derived growth factor B (PDGF-B) (R&D Systems) interleukin-1 beta (IL-1β) and transforming growth factor beta-1 (TGF-β1) (Life Technologies). IL-24 was dissolved in sterile phosphate buffered saline (PBS); IL-1β in sterile distilled water; TGF-β1 and PDGF-B in HCl (4 mmol/l).
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2

Characterization of Inducible Reporter Cell Lines

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The NIH-3T3 cells were seeded in a 10-cm Petri dish. At 80% confluence, they were transfected with a combination of DNA and PEI (6 μL PEI/500 ng DNA, PEI stock concentration 0.324 mg/mL, pH 7.5). Two days post transfections, the cells were selected and maintained in medium containing G418 (1.2 mg/mL; Sigma). To confirm the secretion of soluble factors, each cell line was cultured in a Petri dish in a serum-free DMEM F-12 medium. For inducible systems, doxycycline (1 μg/mL) was added. Then, 24 h after seeding, the supernatants were collected and concentrations of secreted soluble factors were determined using qPCR (KGF and LL-37) or an appropriate ELISA kit [EGF, FGF-2, IGF-I, HGF, VEGF-A (Abcam); PDGF-B (R&D Systems); TGF-β1, IL1-Ra (eBioscience)] according to the manufacturer’s instructions. Reporter cell lines (fLuc ON/OFF) were characterized by measuring luciferase expression. The inducibility of the cells was tested by adding doxycycline in concentrations 0.01–10 μg/mL.
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3

Quantifying Secreted Proteins and Collagen

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Proteins released from endothelial cells were quantified in samples of conditioned medium using ELISA kits for TGF-β1 (R&D Systems, Minneapolis, MN, USA), PDGF-B (R&D Systems), PDGF-C (Cloud-Clone Corp, Wuhan, China), PDGF-D (MyBiosource Inc., San Diego, CA, USA) or CTGF (Cusabio Life Science, Wuhan, China) according to the manufacturers’ protocols. Collagen content in conditioned medium was quantified using the Sircol Collagen Assay Kit (Biocolor Ltd., Carrickfergus, UK) according to the manufacturer’s protocol.
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4

Inhibition of PDGF-B Signaling via HNHA and SAHA

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HNHA and SAHA (vorinostat) were provided by Dr H-J. Kwon. Meloxicam and PDGF-B were purchased from R&D Systems.
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5

Culturing and Treating Colon Fibroblasts

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CCD-18Co human colon fibroblast cell line (ATCC, Manassas, VA, USA) was cultured in Eagle's Minimum Essential Medium (EMEM) (ATCC) supplemented with L-glutamine, 10% heat-inactivated FBS (Invitrogen) and 1% streptomycin and penicillin (Sigma-Aldrich) at 37 °C and 5% CO2. To perform mRNA expression analysis and Annexin/PI staining, CCD-18Co cells were seeded in 6-well plates (n = 6 well/treatment group) at a density of 5 × 105 cells/well, for fibroblast migration, MTT and SiriusRed assays, cells were seeded into 96-well plates at a density of 104 cells/well (n = 5 well/treatment group). After plating, cells were treated with recombinant IL-24 (100 ng/ml, R&D), TGF-β1 (1 nM, R&D) or PDGF-B (10 ng/ml, R&D). Control cells were treated with corresponding solvents (IL-24 and PDGF-B: PBS; TGF-β1: 4 mM HCl) alone.
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6

Effects of PDE-EVs on Cell Proliferation

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P-MCs, PDE-FBs, and P-FBs were seeded into 96-well plates at a density of 4 × 103 cells/well. MTT assays were performed on 30 v/v% PDE, 10 ng/mL PDGF-B (R&D Systems, USA), or 10 ng/mL TGF-β (R&D Systems, USA)-treated P-MCs, PDE-FBs, or P-FBs (n = 5 well/treatment group) in the absence or presence of 4.5 × 109–1010 particles/mL PDE-EVs according to the instructions of the manufacturer (MTT Cell Proliferation/Viability Assay kit, R&D Systems, USA). Absorbance was recorded at 570 nm and at 690 nm as background in a SPECTROstar Nano microplate reader using SPECTROstar Nano MARS v3.32 software (BMG Labtech, Ortenberg, Germany). Vehicle-treated cells (4 mM hydrogen chloride (HCl) in case of PDGF, TGF-β, 30 v/v% 1.5% glucose-containing peritoneal dialysis fluid (Fresenius Medical Care, UK) in the case of PDE and PBS in the case of EV) served as controls. Results were normalized and determined as the percentage ratio of control group values.
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7

Multiplex ELISA for Mouse Biomarkers

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ELISAs were performed with serum or urine according to the manufacturer’s instructions. Immunoassay kits (targeting mouse TGF-β1 and platelet-derived growth factor B [PDGF-B]) were purchased from R&D Systems, and the connective tissue growth factor (CTGF) kit was from MyBiosource Inc. (San Diego, CA). Mouse microalbuminuria kit was purchased from Elabscience (China). Total anti-dsDNA IgG and IgG isotype concentrations were measured by ELISA in serum diluted 1:200 as described [17 (link)]. The optical density values were read at 450 nm.
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8

Cytokine and Growth Factor Preparation

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Recombinant human interleukin 24 (IL-24), and platelet-derived growth factor B (PDGF-B) were purchased from R&D Systems. Recombinant human interleukin-1 beta (IL-1β) and transforming growth factor beta-1 (TGF-β1) were purchased from Life Technologies. IL-24 was dissolved in sterile phosphate buffered saline (PBS); IL-1β was dissolved in sterile distilled water; TGF-β1 and PDGF-B were dissolved in HCl (4 mmol/l).
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9

Serological Biomarkers for Cancer Prognosis

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Serological marker measurement was performed using ELISA kits according to the manufacturer's protocols: IL4 (D4050), TIMP1 (DTM100), IL3 (D3000), IL1A (DLA50), PDGFB (DBB00), TEK (or TIE2, DTE200), PECAM1 (DCD310), MMP2 (MMP200), pro‐MMP10 (DM1000), KLK3/PSA (DKK300), free IGFBP1 (DGB100), CX3CL1 (DCX310), IL19 (D1900) (all R&D SYSTEMS); and YAP (LifeSpan BioSciences, Inc., LS‐F49700). A calibration curve was generated using known concentrations of analyte. Samples were further diluted and reassayed if readings were above the linear range of the calibration curve. Data are reported as mean ± SD. ELISA kits details used for serological marker measurement are listed in Table S3. The degree of correlation between blood markers and patient PFS were evaluated to choose potential biomarkers for predicting responses to treatment or disease prognosis.
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10

Recombinant Protein Preparation for Research

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Recombinant human epidermal growth factor (EGF), tumor necrosis factor alpha (TNF-α), interleukin-17 (IL-17), interleukin-24 (IL-24), and platelet-derived growth factor B (PDGF-B) were purchased from R&D Systems (Minneapolis, MN, USA). Recombinant human interleukin-1 beta (IL-1β) and transforming growth factor beta-1 (TGF-β) were purchased from Life Technologies (Carlsbad, CA, USA). EGF, TNF-α, and IL-24 were dissolved in sterile phosphate buffered saline (PBS); IL-1β was dissolved in sterile distilled water; IL-17, TGF-β and PDGF-B were dissolved in 4 mM HCl.
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