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Abi stepone plus pcr instrument

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ABI StepOne Plus PCR instrument is a real-time PCR system designed for a wide range of quantitative and qualitative gene expression analysis applications. The instrument provides accurate and reliable data collection and analysis for research purposes.

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5 protocols using abi stepone plus pcr instrument

1

Quantitative PCR for AIM2 Expression

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Total RNA was extracted from cells with TRIzol reagent (Invitrogen, CA, USA) and reverse transcribed into cDNA by using a PrimeScript RT Reagent Kit (Takara, Dalian, China). Finally, quantitative PCR was performed in an ABI StepOne Plus PCR instrument (Applied Biosystems, CA, USA) with a SYBR green kit (Applied Biosystems), and the relative gene expression levels were normalized to that of GAPDH. The primer sequences were as follows: AIM2 F: TTGAGACCCAAGAAGGCAAG, R: CGTGAGGCGCTATTTACCTC; and GAPDH F: GCCAAGGCTGTGGGCAAGGT, R: TCTCCAGGCGGCACGTCAGA.
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2

Quantitative Gene Expression Analysis

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Total RNA was extracted from the brains and cells using the TRIzol reagent (Invitrogen) according to the manufacturer’s protocol. Then cDNA was reverse transcribed with a PrimeScript RT Reagent Kit (Takara). Finally, ABI StepOne Plus PCR instrument (Applied Biosystems) with a SYBR green kit (Applied Biosystems) was used to perform quantitative PCR. The expression of target gene levels was normalized to the endogenous control GADPH. The primer sequences were as follows:
TNF-αForwardAGTCTGCACAGTTCCCCAAC
ReverseTTAGGAAGACACGGGTTCCA)
MertkForwardAAGGTCCCCGTCTGTCCTAA
ReverseGCGGGGAGGGGATTACTTTG
GAPDHForwardGCCAAGGCTGTGGGCAAGGT
ReverseTCTCCAGGCGGCACGTCAGA
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3

Rat Liver Gene Expression Analysis

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RNA was extracted from rat liver tissue and reverse transcribed into cDNA according to a cDNA reverse transcription kit. RT-qPCR was performed according to the instructions using ABI StepOne PLUS PCR instrument (Applied Biosystems, Foster City, USA) while β-actin as an internal reference. Reaction conditions: 95 °C, 30 s, 95 °C 5 s, 60 °C 34 s, 40 cycles. Relative quantification of target genes was performed using relative quantitative analysis methods.
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4

EGF-Induced Gene Expression Analysis in A549 and H1299 Cells

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A549 and H1299 cells were treated with different final concentrations of EGF (0, 2.5, 5, 10, 20 or 50 ng/ml) for 48 h. Total RNA was extracted from these A549 and H1299 cells using RNAiso Plus (Takara Bio, Otsu, Japan) according to the manufacturer's protocol and was quantified with NanoDrop 2000 (Thermo Fisher Scientific). RNA (1 µg) was used as the template for cDNA synthesis; cDNA was reverse transcribed with the Primscript RT Reagent kit (Takara Bio). RT-qPCR reactions were performed on ABI StepOnePlus PCR instrument (Applied Biosystems; Thermo Fisher Scientific) for 40 cycles at 95°C for 5 sec, and at 60°C for 30 sec. Comparative quantification was determined using the 2−ΔΔCT method. Expression levels of RFPL3 and hTERT mRNA were standardized to GAPDH. Primer sequences are listed in Table I.
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5

Cerebral Ischemia Gene Expression Analysis

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Total RNA was extracted from cerebral ischemic penumbra tissues using TRIzol reagent (Invitrogen, Frederick, MD, USA) according to the manufacturer’s instructions. Then, RNA was reverse-transcribed into cDNA using a PrimeScript Reagent Kit (Vazyme, Nanjing, China). Quantitative real-time PCR was implemented on an ABI StepOne Plus PCR instrument (Applied Biosystems, CA, USA) with an SYBR green kit (Applied Biosystems). The relative gene expression levels were quantified and normalized to GAPDH. The primer sequences used were as follows:
Nos2: F: CAGCTGGGCTGTACAAACCTT and R: CATTGGAAGTGAAGCGTTTCG.
Il6: F:GCTGGTGACAACCACGGCCT and R: AGCCTCCGACTTGTGAAGTGGT;
Tnfa: F: CAAGGGACAAGGCTGCCCCG and R: GCAGGGGCTCTTGACGGCAG;
Ccl2:F: TTGAGGTGGTTGTGGAAAAGG and R: GTGCTGACCCCAAGAAGGAAT;
Il1b:F: AAGCCTCGTGCTGTCGGACC and R: TGAGGCCCAAGGCCACAGG;
Il10: F: GGTTGCCAAGCCTTATCGGA and R: ACCTGCTCCACTGCCTTGCT;
Gapdh: F: GCCAAGGCTGTGGGCAAGGT and R: TCTCCAGGCGGCACGTCAGA.
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