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6 protocols using cd3e pe

1

Quantification of Immune Cell Subsets

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Fresh isolated 2 × 106 cells/mouse of splenocytes or MLNLs for each group were analyzed by flow cytometry. Separated cells were dyed with rabbit anti-mouse CD16/CD32, CD3e-PE, CD19-PE-Cy7, and CD11c-APC (BD Biosciences, Shanghai, China), as well as goat anti-mouse CCR10-Axlexa Flour 488 (Abcam, Cambridge, UK), at 4 °C for 30 min. The stained cells were washed and detected on a BD FACSAria III platform. The absolute number of CD3e+, CD19+, or CD11c+ cells (1 × 105/mouse) from each immunization group and control group (pcDNA3.1) was analyzed by flow cytometry. CCR10 expression on CD3e+, CD19+, or CD11c+ cells was analyzed using FlowJo V10 software (BD Biosciences, Shanghai, China).
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2

Multiparametric Flow Cytometry Analysis

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Flow-cytometry antibodies included CD3e-PE, PD1-BV605, CD45-BV786 (BD-Biosciences), CD90.1-FITC, CD62L-PECy7, CD45.1-APC, CD45.1-PE (eBioscience), CD45.2-Alexa700, CD-8α-Percp-Cy5.5, CD4-FITC, CD103-APC, CD24-APCcy7 (Invitrogen), CD44-APCy7, CD4-BV421, F4/80-PercpCy5.5, CD39-PECy7, PDL1-PE, CD90.2-Alexa 700, MHCII-BV421, CD11b-BV650, Ly6C-BV711 (Biolegend), CD8α-PE-Texas-red (Life Technologies, Carlsbad, CA, USA). Blocking PD-1 antibody (clone RMP1-14, BioXCell, Branford, CT, USA) was administered systemically by intraperitoneal injections of 250 μg [41 (link)]. Blocking anti-CD40L (clone MR1, BioXCell) was administered systemically by intraperitoneal injections of 250 μg [19 (link)].
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3

Characterizing Leukemic Blast Cell Populations in Mice

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Mice of generation x + 1 with signs of emerging hind limb paralysis or elevated CD19+ blast levels in the peripheral blood were anesthetized with ketamine/xylazine, and the animal was exsanguinated via the retrobulbar venous plexus. After cervical dislocation for confirmation of death, spleen and femoral bones were dissected and collected in cold PBS. Bone marrow and spleen cells were isolated as described before (Richter et al. 2020 (link)). For flow cytometric characterization of the blast population using FACSVerse (Beckton Dickinson) and FACSuite software, the following antibodies were used: CD3e-FITC, CD11b-FITC, CD8a-PE (all Miltenyi Biotec), CD34-FITC, CD45R-FITC, CD3e-PE, Sca-1-PE, CD4-APC, c-kit-APC, CD45-PerCP-Cy5.5 (all BD), CD19-PE, IgM-APC (all Biolegend). Doubling times of leukemic cell populations were calculated from peripheral blood blast frequencies using the following formula with t1 and t2 indicating the age of the animal in days at the respective time points of sample analysis: Doublingtime=t2-t1×log(2)log(blastfrequency(t2))-log(blastfrequency(t1))
Cytospins were prepared from spleen and bone marrow cell suspensions and stained as described before (Richter et al. 2019 (link)). For monitoring of CD19+ blast frequencies, blood (< 50 µl) was sampled from the tail vein, and CD19+, c-kit+ and Sca-1+ cell populations were quantified as described above.
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4

Quantification of T cell subsets

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Blood cells from 300 μl blood were incubated in RBC-Lysis buffer (Biolegend) to lyse the red blood cells. Remaining cells were washed and incubated with a cocktail of fluorochrome-conjugated antibodies (Cd4-PE-Cy7 (#552775) and Cd62L-FITC (#561917) from BD Pharmingen; Cd3e-PE (#12–0031), Cd8a-eFluor 450 (#48–0081) and Cd44-APC (#17–0441) from eBioscience.), incubated with propidium iodide for the detection of dead cells and analysed using the FACSCanto II analyser (BD Biosciences). The following T cell subsets were quantified: Cd3+, Cd8+, Cd44high cytotoxic memory T cells; Cd3+, Cd8+, Cd44low, Cd62Lhigh cytotoxic naïve T cells, Cd3+, Cd4+, Cd44high helper memory T cells and Cd3+, Cd4+, Cd44low, Cd62Lhigh helper naïve T cells.
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5

Phenotypic Analysis of Rodent Tumor Cells

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Rodent tumors were harvested and resuspended as single cells in phosphate-buffered saline (PBS)/0.3% bovine serum albumin. Cells were washed and incubated with the following antibodies: CD45-APC-Cy7 (BioLegend, clone 30-F11, catalog no. 103116, lot no. B242535), CD3e-PE (BD, clone 145-2C11, catalog no. 553061, lot no. 22126), GR1-PerCP (BD, clone Ly-6G/Ly-6C, catalog no. 552093, lot no. 73108), TER119-APC (BD, clone Ter-119, catalog no. 557909, lot no. 42622), B220–Alexa Fluor 647 (BD, clone RA3-6B2, catalog no. 557683, lot no. 22218), CD4-PerCP (BD, clone L3T3, catalog no. 553654, lot no. 60912), and CD8a-FITC (BD, clone Ly-2, catalog no. 553030, lot no. 46675), as indicated. Cells were analyzed on a custom-built LSR II flow cytometer (BD). Data compensation and analysis were performed using noncommercial software developed in our laboratory (73 (link)).
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6

Comprehensive Murine and Human Immune Profiling

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Flow cytometry antibodies for murine samples included CD3e-PE, PD1-BV605, CD45-BV786 (BDbiosciences), CD90.1-FITC, CD62L-PECy7, CD45.1-PE (ebioscience), CD45.2-Alexa700, CD-8α-Percp Cy5.5, CD4-FITC, CD103-APC, CD24-APCcy7 (Invitrogen), CD44-APCy7, CD4-BV421, F4/80-PercpCy5.5, CD39-PECy7, PDL1-PE, CD90.2-Alexa 700, MHCII-BV421, CD11b-BV650, Ly6C-BV711 (Biolegend), CD8α-PE-Texas red (life technologies), CD278 (ICOS)-PE (Biolegend). Flow cytometry antibodies for human samples included CD45-BV510, CD3-Alexa700, CD4-BV785, CD8-BV711, CTLA-4-PE/Dazzle 594, 4-1BB-PE (Biolegend), CD39-BV650, PD-1-PE-Cy7 and Ki-67 Alexa 488 (BD Biosciences), CD103-APC and FOXP3-Alexa 700 (eBioscience).
Mouse antibodies for the explant assays included anti-PD1 (RMP1-14) and anti-CTLA-4 (9D9) by BioXCell and OX40 (OX86) kindly provided by Dr. Andrew Weinberg (EACRI). Human antibodies for the explant assays included anti-PD1 and anti-CTLA4 purchased from Invitrogen and anti-OX40 kindly provided by Dr. Andrew Weinberg (EACRI).
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