The largest database of trusted experimental protocols

6 protocols using ab7755

1

Immunohistochemical Analysis of Tissue Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemistry, paraffin blocks were cut into 4 μm sections, deparaffinized in xylene, and rehydrated in graded ethanol solutions. Endogenous peroxidase activity was blocked with 3% hydrogen peroxide for 20 min, washed with phosphate‐buffered saline (PBS; 0.01 m, pH 7.4) three times for 5 min, and incubated with blocking buffer at 37 °C for 60 min. Tissue sections were incubated overnight at 4 °C with anti‐Desmin (1 : 200, ab15200; Abcam, Guangdong, China), anti‐α‐SMA (1 : 200, ab7817; Abcam), anti‐CK7 (1 : 8000, ab181598; Abcam), anti‐CK19 (1 : 200, ab7755, Abcam), or anti‐EpCAM (1 : 200, ab71916; Abcam) antibodies, and then with horseradish peroxidase (HRP)‐conjugated rabbit anti‐mouse IgG (A9044; 1 : 200) or anti‐rabbit IgG (A0545; 1 : 200) secondary antibodies for 1 h at 37 °C. HRP‐conjugated secondary binding was visualized using a DAB+ substrate chromogen system (Dako, Beijing, China). Nuclei were counterstained with hematoxylin. Bright‐field images were captured using an optical microscope (BX53; Olympus, Shanghai, China). Brown staining was considered positive. Positive areas were analyzed by using winroof software (V6.3, Mitani Corporation, Tokyo, Japan). The positive area (%) per high‐power field (200×) was calculated as follows: expression = positive area/total area × 100%.
+ Open protocol
+ Expand
2

Western Blot Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ca9-22 cells were lysed and equal amounts of protein were loaded and separated on 8% SDS-PAGE gels, and transferred to Hybond 0.2-μm polyvinylidene fluoride membranes. The membranes were blocked and probed with specific primary antibodies at 4°C overnight, followed by secondary antibody incubation for 1 h at room temperature. Membranes were incubated with anti-TAK1 (ab109526; Abcam, Cambridge, UK), anti-MMP-9 (ab119906; Abcam), anti-β4 integrin (ab29042; Abcam), anti-cytokeratin 19 (ab7755; Abcam), anti-p115-rhoGEF (ab220892; Abcam), anti-laminin 5 (ab14509; Abcam), anti-67 kDa laminin receptor (ab133645; Abcam), anti-type IV collagen (ab6586; Abcam), and anti-β-actin (#12,262; Cell Signaling Technology, MA) antibodies for 2 h. Anti-rabbit and anti-mouse IgGs conjugated with horseradish peroxidase were used as the secondary antibodies. Immunoreactivity was detected by ECL. The ChemiDoc MP Imaging System (Bio-Rad, Hercules, CA) was used for detection and analysis of immunoblots.
+ Open protocol
+ Expand
3

Immunofluorescence Staining of Organoid Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
Organoids were fixed in 4% paraformaldehyde solution and embedded in paraffin. Sections were subjected to H&E and IF staining. The following primary antibodies were used for IF staining: KRT19 (ab7755, Abcam; 1:100), CYP3A5 (ab108624, Abcam; 1:200), KRT17 (sc393002, Santa Cruz; 1:50), GATA6 (AF1700, R&D; 1:100), Ki-67 (ab16667, Abcam; 1:200) and DAPI (D9542, Sigma; 1:1,000). Images of H&E and IF staining were acquired using imaging system Tissue-FAXS software (TissueGnostics). H&E images were acquired using a ×20 objective lens in brightfield. IF images were acquired using a ×20 objective lens with light-emitting diodes (LEDs) with specific light filters. IF images of negative-control sections were used to set the appropriate gating to exclude background IF and non-specific binding signals. The expression level of each protein was calculated by the percentage of protein-positive-stained cells in DAPI-positive cells.
+ Open protocol
+ Expand
4

Immunofluorescence Analysis of C/EBPβ and YY1

Check if the same lab product or an alternative is used in the 5 most similar protocols
To examine protein expression of C/EBPβ and YY1 in GE1 cells, immunofluorescence was carried out. After plating 30 μL of GE1 cells from confluence in 75 cm2 flask on culture slides (Falcon® CultureSlides, Corning® BioCoat™, Hampton, NH, USA), the plates with cells were incubated at 33 °C for 12 h. After treatment with PgLPS for 12 or 24 h, the cells were rinsed with PBS twice and fixed by 4% paraformaldehyde for 15 min at RT. The fixed cells were rinsed by PBS twice and permeabilized with 0.5% Triton X‐100 in PBS for 10 min at RT. After removing permeabilization solution, there followed blocking with 1% bovine serum albumin in PBS for 20 min at RT. The cells were treated with 100 μL of primary antibodies diluted with buffer (1% BSA in PBS) for 1 h at RT followed by incubation with secondary antibodies for 1 h at RT. For the primary antibodies, we used C/EBPβ (1 : 50, sc‐746; Santa Cruz Biotechnology), YY1 (ChIP Grade; ab38422; Abcam) rabbit polyclonal antibodies and CK19 (1 : 100, ab7755, Abcam) mouse monoclonal antibody. For detection signaling for fluorescence, we used goat anti‐mouse IgG H&L (Alexa Fluor® 488, 1 : 200, ab150113, Abcam) and goat anti‐rabbit IgG H&L (Alexa Fluor® 647, 1 : 200, ab150079, Abcam). Mounting and nuclear staining with 4′,6‐diamidino‐2‐phenylindole (DAPI) were performed (Fluoroshield mounting medium with DAPI, ab104139, Abcam).
+ Open protocol
+ Expand
5

Western Blot Analysis of Dental Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total proteins extracted from Ca9‐22 cells were separated by 12% SDS/PAGE and transferred onto a Hybond 0.2‐μm PVDF membrane. The membrane was incubated with anti‐AMTN (ab122312; Abcam, Cambridge, UK), anti‐CK19 (ab7755; Abcam), and anti‐α‐tubulin (sc‐5286; Santa Cruz Biotechnology, CA, USA) antibodies for 2 h. Anti‐rabbit and anti‐mouse IgG conjugated with horseradish peroxidase were used as the secondary antibodies. Immunoreactivities were detected by ECL Prime Western Blotting Detection Reagents 24.
+ Open protocol
+ Expand
6

Multiplex IHC Profiling of Pancreatic Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC assays for CD8 (ZA-0508; ZSGB-BIO, City of Beijing, China), CD133 (ab226355; Abcam, City of Cambridge, USA), CK19 (ab7755; Abcam) PD-1 (ab52587; Abcam), and Tim-3 (ab241332; Abcam) were performed on pancreatic cancer tissues using and IHC kit (ZLI-9018; ZSGB-BIO, City of Beijing, China) in accordance with standard protocols following a previously described procedure25 (link).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!