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Phenol red free media

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Phenol red-free media is a type of culture media used in cell and tissue culture applications. It is formulated without the pH indicator phenol red. This allows for more accurate monitoring of pH changes in the culture medium during cell growth and experimentation.

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13 protocols using phenol red free media

1

Isolating Salivary Gland Mesenchymal Stem Cells

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We obtained informed consent from subjects during MSG biopsy visits in compliance with the Helsinki declaration. pSS subjects met 2016 ACR/EULAR criteria.(10 (link)) Control patients recruited at the time of the MSG biopsy had normal serology (ANA ≤ 1:160 and negative anti-SSA antibody), focus score <1 on histopathology, and did not have a diagnosis of pSS, another autoimmune disease, HIV, or Hepatitis C. Thirteen pSS and 12 control subjects were recruited (Table 1).
To isolate MSG-MSCs, MSGs were collected from the recruited subjects, minced, and digested with 3 mg/mL collagenase type IV (Worthington, Lakewood, NJ) for 1 hour at 37°C.(11 (link)) The digested tissue was washed with HBSS, filtered through a 100 μM strainer, spun, and re-suspended in complete media (α-minimal essential media (MEM, Corning, Tewksbury, MA), 20% fetal bovine serum (FBS, Sigma-Aldrich, St. Louis, MO), 1% L-Glutamine (Corning), and 1% Penicillin/Streptomycin (Lonza, Walkersville, MD). For estrogen treatment experiments, we used phenol-red free media (Thermo Fisher Scientific, Waltham, MA) and charcoal-stripped FBS (Sigma-Aldrich). All experiments were performed on MSG-MSCs between passage two and passage eight. CFU-F was calculated by plating 100 MSG-MSCs in six, T-75 flasks. After seven days, the number of colonies with ≥ 20 cells were counted and averaged.
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2

Sexual Dimorphisms in PKA Activity

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Sexual dimorphisms in Protein Kinase A activity in ARVMs was determined using the Protein Kinase A activity kit (Abcam, Cambridge, United Kingdom). After isolation, ARVMs from both sexes were cultured for 45 minutes then washed with phenol-red free media (ThermoFisher, Rochester, NY) and flash frozen. ARVMs were collected in lysis buffer [20 mmol/L MOPS, 50 mmol/L β-glycerolphosphate, 50 mmol/L sodium fluoride, 1mmol/M sodium vanadate, 5 mmol/L EGTA, 2 mmol/L EDTA, 1% NP40, 1 mmol/L dithiothreitol (DTT), benzamidine, phenylmethane- sulphonylfluoride (PMSF) and 10 µg/mL leupeptin and aprotinin] and this crude enzyme lysate was used for the remainder of the assay according the manufacturer’s protocol.
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3

Bimolecular Fluorescence Complementation for Receptor Interaction

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Bimolecular fluorescence complementation vectors were generated by gateway cloning with donor vectors containing Axl (pDONR223-Axl, Addgene plasmid 23945) or EGFR (pDONR223-EGFR, Addgene plasmid 23935).29 (link) These were cloned into pDEST-ORF-V1 (Addgene plasmid 73637) and pDEST-ORF-V2 (Addgene plasmid 73638), respectively. An expression vector encoding full length Venus fluorescent protein was also utilised as control. For confocal microscopy, HEK-293T cells expressing an H2B-mCherry nuclear marker were grown on glass coverslips within a six-well plate. These were transfected with 500 ng of each vector (or Venus control) using Polyplus Jetprime and incubated for 16 h. The coverslips were prepared for confocal microscopy by fixation with 1% paraformaldehyde for 5 min at room temperature. For high-content analysis, HEK-293T cells expressing an H2B-mCherry nuclear marker were grown on Greiner CELLSTAR 96-well plates in phenol red free media (Thermo Fisher Scientific). Each well was transfected with 20 ng of each vector (or Venus control) using Polyplus Jetprime and incubated for 16 h, in the presence of absence of gefitinib at the concentrations indicated. Single cell fluorescence intensity was measured using the ArrayScan XTI Live High Content Platform (Thermo Fisher Scientific).
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4

Live Cell Fluorescence Imaging

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Fluorescence imaging of live cells was performed using an oil objective on a microscope (Leica DMi8, Germany) housed in a closed system to maintain the temperature at 37 °C and CO2 levels at 5%. Cells were seeded in glass-bottom dishes, and the media were replaced with phenol red-free media (Thermo Fisher Scientific, USA) before photography. Fluorescent images were then captured every 5 min for 4 h using Leica Application Suite X Imaging software.
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5

Hypoxia-induced Metabolite Extraction

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Media were changed to phenol red–free media (Gibco) before exposing HCC cells to 1 or 20% O2 for 48 hours. For the metabolite extraction from cultured medium, 1 ml of sample was mixed with 4 ml of chilled 80% methanol and incubated at −80°C for 15 min. The mixture was spun down at 4°C for 15 min with a speed of 13,500 rpm, and the supernatant were transferred to another tube and dried with a vacuum centrifuge.
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6

Dose-Response Viability Assay in Breast Cancer Cells

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For treatments in full serum, cells were plated in 96-well plates and treated in duplicate wells with a dose titration of CPI-1612 for 4 days. For treatments in charcoal-stripped serum, cells were plated in 96-well plates, washed after overnight incubation, and moved to phenol-red free media (Gibco) + 10% charcoal-stripped serum (Gibco) for 2 days. 17-β-estradiol at 100 nM was added along with a dose titration of CPI-1612 for 4 days. Viability was assessed using Cell Titer Glo (Promega), and GraphPad Prism curve fitting was used to fit the data.
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7

Reagent Acquisition and Preparation

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All chemicals and reagents, DMEM/F-12 Ham,
RPMI, and DMEM cell culture media, and corresponding components were
purchased from Sigma-Aldrich and were used as received. Phenol red
free media (Gibco), fetal bovine serum (FBS, heat-inactivated, Gibco),
alamarBLUE reagent (Invitrogen), and co-localizing dyes were purchased
from Thermo Fisher Scientific. For synthesis, anion metathesis using
tetrabutylammonium chloride in acetone provided the chloride salts
from their hexafluorophosphate salts. Peptides were purchased from
Celtek Peptides (USA) at >95% purity. All other materials were
obtained
from Sigma-Aldrich (Merck) or Fluorochem (UK) and were used without
further purification.
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8

Histone-Induced Cytotoxicity Assay in Rat Cardiomyocytes

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LDH assay was used to detect the cytotoxicity levels of histones on rat CMs according to the protocol which we described before [33 (link)]. Briefly, supernatants fluids were obtained from CMs exposed to histone, using phenol red-free media (Gibco, Grand Island, NY). The percentage of cytotoxicity (LDH release) from the sample treated with histone was measured compared to LDH content in total lysis fluids induced by 0.1% triton detergent (Sigma-Aldrich, St. Louis, MO). LDH release was measured using LDH assay kit (Cayman Chemical, Ann Arbor, MI) according to the manufacturer's instructions.
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9

Quantifying Cell Viability via MTT Assay

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The MTT assay measures the reduction of MTT (3-(4,5-Dimethylthiazol-2-yl)-2,5- diphenyltetrazolium bromide) to formazan within living cells. MTT solution was prepared by the addition of 1 mg MTT (Sigma Aldrich®) to 1 ml of phenol red-free media (Gibco®).
Cell culture media was removed and wells were washed with 100 μl PBS followed by the addition of 100 μl MTT (1 mg per ml) per well protected from light. The plate supplemented with MTT was incubated at 37 °C/5% CO2 for 4 h. Following incubation, light microscopy was used to observe whether formazan crystals had formed within the cells. Then the supernatant was removed by aspiration and 100 μl of isopropanol was added to the wells to dissolve the crystals formed. Colour change was assessed by absorbance at 560 nm using a ThermoScientific Multiskan plate-reader with the SkanIt (Research Edition) for Multiskan Spectrum 2.2 software.
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10

Histone-induced cytotoxicity assay

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Supernatants fluids were obtained from PMNs or PEMs exposed to purified histones, using phenol red-free media (Gibco, Grand Island, NY). The percentage of cytotoxicity (LDH release) from each treatment condition (H1, H2A, H2B, H3 and H4) was measured compared to LDH content in total lysis fluids induced by 0.1% Triton detergent (Sigma-Aldrich, St. Louis, MO). LDH release was measured according to the manufacturer’s (Cayman Chemical, Ann Arbor, MI) instructions.
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