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Plat e cells

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Plat-E cells are a retroviral packaging cell line developed for the high-titer production of recombinant retroviruses. These cells stably express the essential viral packaging components, gag, pol, and env, allowing for efficient virus production without the need for further engineering.

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45 protocols using plat e cells

1

Retroviral Transduction of Osteoclast Precursors

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Retrovirus packaging was described previously
[13 (link)]. In brief, to isolate the retrovirus, pMX-IRES-GFP (the control retrovirus vector encoding GFP, green fluorescent protein) and pMX containing constitutively active (CA)-NFATc1 were transiently transfected into Plat-E cells (platinum-E retrovirus packaging cell line; Cell Biolabs, Inc.) with Lipofectamine 2000 (Invitrogen, USA) according to the manufacturer’s protocol. Viral supernatant was collected from the culture media 48 h after transfection. BMMs were incubated with viral supernatant in the presence of polybrene (10 μg/ml) for 8 h. The infection efficiency of the retrovirus was determined by GFP expression and was always greater than 80%. After infection, BMMs were induced to differentiate in the presence of M-CSF (30 ng/ml) and RANKL (10 ng/ml) for 4 days.
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2

Immortal Melanocyte Cell Lines in Research

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Immortal melanocyte cell lines were used in this study – wild-type melan-Ink4a-Arf-1 (from C57BL/6J, a/a, Ink4a-Arf−/− mice, formerly called melan-Ink4a-1, referred to here as WT or melan-Ink4a) (Ha et al., 2007 (link)), and AP-3-deficient melan-mh1 [from C57BL/6J Ap3dmh/mh, referred to here as AP-3 (melan-mh)] or melan-pe1 [from C57BL/6J Ap3b1pe/pe, referred to here as AP-3 (melan-pe)] (Theos et al., 2005 (link)). Cells were maintained as described previously (Sviderskaya et al., 2002 (link)).
Plasmids were transfected into the melanocytes or PLAT-E cells (Cell Biolabs) by Lipofectamine 2000 (Invitrogen) according to the manufacturer's protocol. Melanocytes were also transduced with retroviruses (containing different pBMN-IRES-Hygro or pRSshRNA plasmids) isolated from PLAT-E cells (Morita et al., 2000 (link)). Post transduction, melanocytes were selected twice with hygromycin (200 μg/ml) or puromycin (2 μg/ml) on the 2nd and 4th day. In some experiments, shRNA knockdown cells were transfected with GFP–STX13 or GFP–VAMP7 using Lipofectamine 2000 reagent. Stable wild-type (melan-Ink4a) melanocytes expressing different constructs of Myc–STX13 were generated by the retroviral transduction method and used for immunoelectron microscopy and VAMP7 knockdown in Fig. 6A–D. STX13-knockdown cells were rescued by transfecting the cells with GFP–hSTX13WT.
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3

Cell Culture Protocols for Diverse Cancer Cell Lines

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HepG2, Hep3B, HLE, HLF, HuCCT1, and HuH28 cells were obtained from the Japanese Collection of Research Bioresources (Osaka, Japan). Plat-E cells were obtained from Cell Biolabs Inc. (San Diego, CA). HeLa, NIH/3T3, TALDO1 KO, HepG2, Hep3B, HCE, and HCF cells were cultured in Dulbecco’s modified Eagle’s Medium (DMEM; Sigma-Aldrich, St. Louis, MO) supplemented with 10% foetal bovine serum (FBS). Plat-E cells were cultured in DMEM containing 10% FBS, puromycin (1 μg/mL), and blasticidin S (10 μg/mL). HuCCT1 and HuH28 were cultured in RPMI-1640 (Sigma-Aldrich) supplemented with 10% FBS. The cells were maintained in a 37 °C incubator with 10% CO2-humidified air.
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4

Generating Mitofusin-expressing Clonal MEFs

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Plat-E cells (Cell Biolabs) were maintained in complete media supplemented with 1 μg/ml puromycin and 10 μg/ml blasticidin and plated at ∼80% confluency the day before transfection. Plat-E cells were transfected with FuGENE HD (Promega) and transfection regent was incubated overnight before a media change. Viral supernatants were collected at ∼48, 56, 72, and 80 h posttransfection and incubated with MEFs in the presence of 8 mg/ml polybrene. Approximately 16 h after the last viral transduction, MEF cells were split and selection was added if needed (1 μg/ml puromycin or 200 μg/ml hygromycin).
Clonal populations were generated by plating cells at very low density and clones were collected onto sterile filter paper dots soaked in trypsin. Following expansion, whole cell extract from clonal populations was screened by Western blot analysis for mitofusin against wild-type controls.
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5

Culturing Primary Fibroblasts and iPSCs

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Primary fibroblasts from the skin biopsy were cultured under fibroblast culturing conditions using Dulbecco's modified Eagle medium (DMEM, Lonza, Basel, Switzerland) with 10% FBS (Lonza), 2 mM glutamax (Life Technologies Ltd, Paisley, UK) and 50 U/ml penicillin/streptomycin (Lonza). 293FT-cells (Life Technologies Ltd) were cultured in the same conditions with 1% nonessential amino acids (NEAA, Cambrex, East Rutherford, NJ, USA). Plat-E-cells (Cell Biolabs, San Diego, CA, USA) and irradiated/mitomycin C (Sigma-Aldrich, St. Louis, MO, USA) treated mouse embryonic fibroblasts (MEF) (Millipore, Billerica, MA, USA) were maintained similarly but without antibiotics. iPSCs were sustained together with MEF feeder cells in KSR-medium containing knockout (KO)-DMEM (Life Technologies Ltd), 20% KO-serum replacement (KO-SR, Life Technologies Ltd), NEAA, glutamax, penicillin/streptomycin, 0.1 mM β-mercaptoethanol (Life Technologies Ltd), and 4 ng/ml basic fibroblast growth factor (bFGF, R&D Systems Inc., Minneapolis, MN, USA). All the cells were grown at 37 °C and 5% CO2 and the medium was changed every other day for iPSCs and two times a week for all the other cells.
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6

Culturing Primary Fibroblasts and iPSCs

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Primary fibroblasts were obtained from skin biopsy and cultured under fibroblast culturing conditions: Dulbecco’s modified eagle medium (DMEM, Lonza, Switzerland) containing 10% FBS, 2 mmol/l L-glutamine and 50 U/ml penicillin/streptomycin. 293FT-cells (Invitrogen, CA, USA) were maintained similarly with 1% non-essential amino acids (NEAA, Cambrex, NJ, USA). Plat-E-cells (Cell Biolabs, CA, USA) and irradiated or mitomysin C (Sigma-Aldrich, MO, USA) treated mouse embryonic fibroblast (MEF, Millipore, MA, USA) cells were cultured in the same conditions but without antibiotics. iPS cells were cultured with MEF cells as feeders in KSR-medium: knockout (KO)-DMEM (Invitrogen) containing 20% KO-serum replacement (KO-SR, Invitrogen), NEAA, L-glutamine, penicillin/streptomycin, 0.1 mmol/L 2-mercaptoethanol, and 4 ng/ml basic fibroblast growth factor (bFGF, R & D Systems Inc., MN, USA).
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7

Establishment of Tamoxifen-Inducible GPx4-Deficient MEF Cells

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As previously described,(2 (link),3 (link)) MEF cells isolated from GPx4-loxP TG/GPx4 KO [Tg(loxP-GPx4)+/−:GPx4−/−] mice were immortalized through retrovirus infection with SV40 large T antigen produced by Ziptex (kindly gifted by Komada M). Cre-ERT2 cDNA (kindly gifted by Komada M) was introduced into pMx-Puro vector carrying a SV40-promoter-regulated puromycin-resistance gene. To establish Tamoxifen-inducible GPx4-deficient MEF cells, immortalized GPx4-loxP TG/GPx4 KO MEF cells (TK cells) were infected with a Cre-ERT2-SV40-Puro retrovirus produced from Plat-E cells (Cell Biolabs Inc., San Diego, CA), that was transfected with pMXs-Cre-ERT2-Puro vector and cultured for 7 days with 5 μg/ml puromycin.
We established Tamoxifen-inducible GPx4-deficient MEF cells [ETK1 cells; Cre-ERT2+/−:Tg(loxP-GPx4)+/−:GPx4−/−] after cloning and screening to check for a decrease in GPx4 after the addition of (Z)-4-hydroxytamoxifen (Tamoxifen). ETK1 and Plat-E cells were cultured in DMEM (Nissui Pharmaceutical Co., Ltd., Tokyo, Japan) supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, Waltham, MA) and 5 mg/ml Penicillin-Streptomycin-Glutamine (Thermo Fisher Scientific) at 37°C with 5% CO2.
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8

Generating Stable Cell Lines for Genetic Reporters

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Mouse fibroblast NIH3T3 cells (RIKEN cell bank, Japan), wild-type MEFs, BMAL1−/− MEFs17 (link), HSF1−/− MEFs18 (link), p53−/− MEFs19 (link), human osteosarcoma U2OS cells (RIKEN cell bank, Japan), and plat-E cells (Cell Biolabs Inc.) were cultivated with Dulbecco’s modified eagle medium (D-MEM, Nacalai Tesque) supplemented with fetal bovine serum (FBS, Gibco) and 1% penicillin/streptomycin (Gibco). The morphology and behavior of the cell lines were consistent with their identities, but genetic validation was not carried out. Cell lines were tested for mycoplasma contamination by PCR and found to be negative.
Transfection of a probe DNA plasmid into cultured cells was performed using the TransIT-LT1 transfection reagent (Mirus bio) following the manufacturer’s protocol. For the generation of a stable cell line expressing the Per2-Luc or HSE-SLR reporter, retrovirus infection was conducted using a retrovirus produced in plat-E cells using polybrene (hexadimethrine bromide, final concentration of 0.24 mg/ml). Stable cell lines for the other reporter gene assays were generated by anti-biotic selection with hygromycin B after transfection of the probes.
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9

Retroviral Transduction of Rat Neural Stem Cells

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Rat IAP2 cDNAs were amplified by PCR from rat NSPC cDNA and their coding regions were verified by DNA sequencing. This cDNA was subcloned into pMCs-IRES-EGFP [a replication-incompetent retroviral vector containing an internal ribosome entry site (IRES) sequence followed by the coding sequence for enhanced GFP] (CELL BIOLABS, INC., San Diego, CA). The pMCs-IRES-EGFP vector was used for the production of recombinant retroviruses. Ecotropic virus-packaging (PLAT-E) cells (CELL BIOLABS, INC.) were transfected with the desired plasmids using FuGENE 6 (Roche) and then cultured for 3 days at 37°C. Retroviral particles were collected from the culture supernatant by centrifugation at 15000 g for 5 hours at 4°C and resuspended in NSPC proliferation medium. For retroviral infection, 7 DIV or 14 DIV primary neurospheres were dissociated and mixed with recombinant retrovirus in Ultra-Low Attachment 6 well dish (Corning, INC., Corning, NY). After 24 hours, NSPCs were resuspended in proliferation medium and cultured for 6 days in poly hydroxyethyl methacrylate (Sigma-Aldrich)-coated 10-cm culture dish.
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10

Overexpression and Knockdown of Key Genes in CD8+ T Cells

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PLAT-E cells (Cell BioLabs) were transfected with empty vector (EV), overexpression vectors (Eomes, Bcl2, Tgfbr2), non-targeting shRNA construct, or shRNA constructs targeting P2rx7 (Transomic) with TransIT-LT1 Reagent (Mirus). The Eomes vector was provided by Dr. Steven Reiner, Columbia University; the Bcl2 vector was provided by Dr. Michael Croft, La Jolla Institute for Immunology; and the Tgfbr2 vector was provided by Dr. Wanjun Chen, National Institutes of Health. Retroviral supernatants were harvested 48h and 72h post-transfection. CD8+ T cells were isolated using the CD8+ T cell isolation kit (Miltenyi) and activated with plates coated with 100 μg/mL of goat anti-hamster IgG (H+L, Thermo Fisher Scientific), 10 μg/mL of anti-CD3 (3C11, BioXCell), and 10 μg/mL of anti-CD28 (37.51, BioXCell). After 18–22 hours of activation, the cells were ‘spinfected’ with retroviral supernatant supplemented with 8 g/mL of polybrene (Millipore) at 900g for 90 min at room temperature. The retroviral supernatant was replaced by culture media and the cells were incubated at 37°C. Transduction efficiency was measured based on ametrine or GFP signal using flow cytometry at 24h and 48h post-transduction.
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