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10 protocols using anti flag fitc

1

Multiparameter Analysis of Murine Tissues

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Spleen, pancreas, and thymus tissue was harvested from 10–50 wk old BL/6 and BL/6-CD3FLAGmIR mice in 5 wk increments and fixed in Z-fix (Anatech Ltd, Battle Creek, MI) or 10% formalin w/v (Fisher Scientific, Fair Lawn, NJ) at 4°C overnight. Liver, lung, heart, and kidney tissues were isolated at 15, 25 and 35 weeks of age and prepared as immediately above. Slides were de-paraffinized and rehydrated before antigen retrieval, by microwaving in 10mM citrate buffer pH 6.0. Sections were stained overnight at 4°C with anti-FLAG FITC (1:100 Sigma, St Louis, MO), anti-CD3 APC (1:100, eBioscience, San Diego, CA), anti-insulin produced in guinea pig (1:1500, Sigma, St Louis, MO), washed and stained with secondary anti-guinea pig IgG Texas Red (1:500, Invitrogen) for 1–2 hours at room temperature. After washing, sections were mounted with DAPI-Fluoromount G (Sigma, St Louis, MO) following dehydration and imaged on a Nikon TS fluorescent microscope.
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2

Immunofluorescence Staining of HeLa Cells

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After protein treatment of HeLa cells on a four-well LabTek II chamber slide, the samples were washed with PBS and fixed with fixation solution (1% of methyl alcohol in formaldehyde) for 10 min at RT. Following PBS wash, the samples were treated with permeabilization solution (0.2% Triton X-100 in PBS) for 10 min at RT, and the remaining triton X-100 was removed by PBS wash. The samples were incubated with blocking solution (1% BSA in PBS) for 1 h at RT. Also, the delivered proteins were captured with anti-FLAG FITC (Sigma-Aldrich). After PBS wash, DAPI solution (Sigma-Aldrich) was treated for nuclear counterstaining. The samples were imaged with a confocal microscope (LSM 880, Zeiss).
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3

Immunohistochemical Analysis of Pancreas Tissue

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Pancreas tissue was harvested from BL/6 and BL/6-CD3FLAGmIR mice and fixed in 10% w/v formalin (Thermo Fisher Scientific, Pittsburg, PA, USA) at 4 °C overnight. Slides were de-paraffinized and rehydrated before antigen retrieval, by microwaving in 10 mM citrate buffer pH 6.0. Tissue sections were marked with the hydrophobic barrier. Section was covered with 100 µL blocking buffer, 1% Bovine Serum Albumin in PBS (BSA, Sigma, St. Louis, MO, USA). Sections were stained overnight at 4 °C with anti-FLAG FITC (1:100 Sigma, St. Louis, MO, USA), anti-CD3 APC (1:100, eBioscience, San Diego, CA, USA), guinea pig anti-insulin (1:1500, Sigma, St. Louis, MO, USA), washed and stained with secondary anti-guinea pig IgG Texas Red (1:500, Invitrogen/ Thermo Fisher Scientific Pittsburgh, PA, USA) for 1–2 h at RT. Primary and secondary antibody solution was prepared in the blocking buffer. All staining was performed in humidity chamber to avoid tissue drying and solution evaporation. After washing, sections were mounted with 4′,6-diamidino-2-phenylindole (DAPI)-Fluoromount G (Sigma, St. Louis, MO, USA) following dehydration and imaged on a Nikon TS fluorescent microscope (Nikon Instruments, Melville, NY, USA).
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4

Lipid Labeling and Microsphere Functionalization

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All lipids in this study were purchased from Avanti Polar Lipids, Inc. DiO (DiOC18(3) (3,3′-dioctadecyloxacarbocyanine perchlorate)), DiD (DiIC18(5) ((1,1′-Dioctadecyl-3,3,3′,3′-Tetra-methylindodicarbocyanine Perchlorate)), streptavidin-FITC, and Alexa Fluor633-strepavidin were obtained from Invitrogen (Molecular Probes). Silica microspheres of 5 μm nominal size were obtained from Bangs Laboratories, Inc. Anti-FLAG-FITC was obtained from Sigma-Aldrich. The AlphaLISA reagents were purchased from PerkinElmer Inc. (Waltham, MA).
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5

Immunofluorescent Staining of Transduced Microglia

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The microglia and macrophages were seeded onto coated slides and fixed with 4% formaldehyde. Cells were washed three times with PBS, and then blocked with 5% BSA for 1 h at room temperature. The transduced nt-p65-TMD was stained with anti-FLAG-FITC (1:100, Sigma-Aldrich) overnight at 4 °C. After washing with PBS, the slides were mounted with Vectashield with DAPI (Vector Laboratories, Inc.) and observed under an LSM 710 confocal microscope (Carl Zeiss) (Supplementary Fig. S1d).
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6

Engineering NFAT-Dependent Reporter T Cells

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NK92MI cells were obtained from ATCC and maintained as per the instructions provided. JNG (Jurkat cell line engineered with a NFAT-dependent EGFP reporter gene) was kindly provided by Dr. Arthur Weiss (UCSF) and maintained in RPMI-1640 medium supplemented with 10% FBS21 (link). 293FT cells were obtained from Invitrogen (ThermoFisher Scientific) and cultured as recommended. Primary T cells were isolated and cultured as described earlier4 (link). Polybrene and coelenterazine were obtained from Sigma and Nano light technology, respectively. Strep-Tactin-APC (IBA-lifescience: Cat# 6-5010-001); Anti-Flag-FITC (Sigma: F4049); Anti-Strep-tagII-FITC (Genscript: A01736); Biotinylated Protein L (Genscript: M0097); Streptavidin-APC conjugate (Molecular probes: SA1005); APC-conjugated anti-MYC antibody (R&D systems: IC3696A); and Polyethylenimine (Polysciences Inc: 23966) were obtained from the indicated sources.
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7

Antibody Panel for Cellular Analysis

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The following antibodies are used for WB, ICC or FC: 1:200 (WB) of rabbit anti-NG2 cyto (Stegmüller et al., 2002 (link)), 1:1,000 (WB) of mouse anti-Flag (Sigma, F1804); 1: 200 (FC) of anti-Flag-FITC (Sigma, F4049); 1:1,000 (WB) of rabbit anti-FMRP (Sigma, F4055); 1:1,000 (WB) of rabbit anti-eEEF2 antibody (Abcam, ab40812); 1:1,000 (WB) of rabbit anti-eIF4B (CST, 3592T); 1:1,000 (WB) of rabbit anti-phospho (Ser422) eIF4B (CST, 3591S); 1:200 (ICC) of rabbit anti-PCNA (NEB, 13110); 1:1,000 (WB) of mouse anti-Puromycin (Millipore, MABBE343); 1:5,000 (WB) of rabbit anti-GAPDH (Biomol, A-300-641A); 1:400 (WB) of mouse anti-Cyclin E (SCBT, E-4), 1:1,000 (WB) of rabbit anti-p70S6K1 (CST, 9202). For studying mTOR and p70S6K1 phosphorylation, substrate sampler kit (CST, 9862T) was used and the antibody dilutions were made for WB according to kit suggestions.
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8

Transfection and Analysis of SARS-CoV-2 Spike Protein

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HEK293T cells were transiently transfected with mRNA encoding SARS-CoV-2 WT S or S-2P protein using a TranIT mRNA transfection kit (Mirus). After 24 hr, the cells were harvested and resuspended in FACS buffer (1X PBS, 3% FBS, 0.05% sodium azide). To detect surface protein expression, the cells were stained with 10 μg/mL ACE2-FLAG (Sigma) or 10 μg/mL CR302235 (link) in FACS buffer for 30 min on ice. Thereafter, cells were washed twice in FACS buffer and incubated with FITC anti-FLAG (Sigma) or Alexafluor 647 goat anti-human IgG (Southern Biotech) in FACS buffer for 30 min on ice. Live/Dead aqua fixable stain (Invitrogen) were utilized to assess viability. Data acquisition was performed on a BD LSRII Fortessa instrument (BD Biosciences) and analyzed by FlowJo software v10 (Tree Star, Inc.)
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9

Transfection and Analysis of SARS-CoV-2 Spike Protein

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HEK293T cells were transiently transfected with mRNA encoding SARS-CoV-2 WT S or S-2P protein using a TranIT mRNA transfection kit (Mirus). After 24 hr, the cells were harvested and resuspended in FACS buffer (1X PBS, 3% FBS, 0.05% sodium azide). To detect surface protein expression, the cells were stained with 10 μg/mL ACE2-FLAG (Sigma) or 10 μg/mL CR302235 (link) in FACS buffer for 30 min on ice. Thereafter, cells were washed twice in FACS buffer and incubated with FITC anti-FLAG (Sigma) or Alexafluor 647 goat anti-human IgG (Southern Biotech) in FACS buffer for 30 min on ice. Live/Dead aqua fixable stain (Invitrogen) were utilized to assess viability. Data acquisition was performed on a BD LSRII Fortessa instrument (BD Biosciences) and analyzed by FlowJo software v10 (Tree Star, Inc.)
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10

Metabolic Labeling and Detection of Glycoproteins

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CHO
cells were treated at 20–25% confluency with Ac4GalNAz, Ac34FGalNAz, or DMSO for 3 days in triplicate
at which time cells were harvested as previously described using 10
mM EDTA in PBS (pH 7.4), pelleted, and washed with ice-cold 1% FBS
in PBS three times (5 min, 800g at 4 °C). Cells
were resuspended in 250 μM DBCO-PEG4-FLAG (Jena Bioscience)
in 1% FBS in PBS and incubated for 1 h at room temperature and subsequently
washed three times in ice-cold 1% FBS in PBS. The cell pellet was
resuspended in FITC-anti-FLAG (Sigma) diluted 1:900 in 1% FBS in PBS
for 30 min on ice. Cells were pelleted and washed three times before
resuspension in 500 μL of 1% FBS in PBS containing 2.5 μg
mL–1 propidium iodide for dead cell exclusion and
10,000 cells were analyzed.
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