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6 protocols using live dead fixable violet dead cell staining kit

1

Cell Viability Assay Protocol

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Cell viability was determined using the CellTiter® 96 AQueous Cell Proliferation Assay Kit (Promega) according to manufacturer’s instructions. In brief, 20 μl of reagent was added to each well of a 96-well plate containing OC and 200 μl of culture medium, incubated for a further 2 hrs, and absorbance at 490 nm was recorded using an ELISA plate reader. In certain experiments viability was also quantified by flow cytometry using the LIVE/DEAD® Fixable Violet Dead Cell staining kit (Invitrogen).
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2

Comprehensive B Cell Immunophenotyping

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Bone marrow and spleen single cell suspensions were stained for dead cell exclusion using Live/Dead fixable violet dead cell staining kit (Invitrogen Life Technologies, Grand Island, NY). Surface markers were stained with a mixture of fluorochrome-conjugated antibodies, which included: CD19 (clone 6D5, BioLegend, San Diego, CA), B220 (clone RA3-6B2, eBioscience, San Diego, CA), CD138 (clone 281–2, BD bioscience, San Jose, CA), IgD (clone 11.26c.2a, BioLegend, San Diego, CA), IgM (clone II/41, eBioscience, San Diego, CA), IgG (eBioscience, San Diego, CA), MHC class II (clone 500A2, eBioscience, San Diego, CA), CD80 (clone I6-10A1, BD bioscience, San Jose, CA) CD86 (clone GL-1, BioLegend, San Diego, CA).
Fluorescence minus one (FMO) controls were included in each staining protocol and used to set specific gates (22 (link), 26 , 27 (link)). 6-peak validation beads were used for calibration during the time course analysis. Samples were run on a 12-color LSRII cytometer (BD bioscience, San Jose, CA) and analyzed by Flow Jo software (Tree Star Inc., Ashland, OR).
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3

Quantification of Antigen-Specific CD8+ T Cells

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Spleen and lung lymphocytes were stained with PE-conjugated MHC class I H-2kb dextramers loaded with OVA257–264-peptide (SIINFEKL) (Immudex), for the detection of OVA-specific CD8 T cells, respectively, followed by anti-CD8α, CD44, and CD4. Antibodies were purchased from BD Biosciences, eBioscience, or BioLegend. For detection of adoptively transferred OT-I CD8+ T cells and gut-homing receptors, MLN cells were stained with anti-CD8α, CD45.1, CD44, α4β7, and CCR9. For intracellular cytokine staining, spleen and lung mononuclear cell suspensions were incubated with 2.5 µg/ml of MHC class I restricted peptides (OVA257–264) (Genscript) for 5–6 h at 37°C in complete RPMI in the presence of 1 µg/ml GolgiPlug (BD Biosciences). Cells were stained as before with anti-CD8α, CD44, CD4, IFN-γ, and TNF-α. Intracellular cytokine staining of IFN-γ and TNF-α were performed after fixation/permeabilization (BD Cytofix/Cytoperm, BD Biosciences). For live/dead discrimination cells were stained before fixation (LIVE/DEAD fixable violet dead cell staining kit, Life Technologies). For analysis, all cells were gated on live CD8+ T lymphocytes following live/dead staining. All cells were acquired using a digital flow cytometer (LSR II, BD Biosciences) and data were analyzed with FlowJo software (Tree Star).
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4

Assessing Cell Viability and Proliferation

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Cell viability and proliferation was determined using the CellTiter 96 AQueous Cell Proliferation Assay Kit (Promega, Madison, WI), flow cytometry and the LIVE/DEAD Fixable Violet Dead Cell staining kit (Life Technologies), as previously described (Fordham et al., 2015 (link)).
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5

Multiparameter Flow Cytometry Analysis

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Cells were stained and analyzed using a FACS LSRFortessaTM system (BD Biosciences). Dead cells were excluded with the LIVE/DEAD Fixable Violet Dead Cell staining kit (Life technologies). Lineage-positive cells were excluded using the PerCP5.5-conjugated anti-CD3 (17A2), anti-NK1.1 (PK136), anti-CD19 (6D5), anti-Ly6G (1A8) (Biolegend). PerCP-conjugated anti-CCR3 (83103) added to the lineage staining to exclude eosinophils was from R&D. Allophycocyanin-Cy7-conjugated anti-CD11b (M1/70), PerCP5.5-conjugated anti-Ly6G (1A8), Brilliant violet 510-conjugated anti-MHC Class II (I-A/I-E) (M5/114.15.2) and FITC-conjugated and Alexa Fluor 700-conjugated anti-Ly6C (AL21) were from BD Pharmingen. Allophycocyanin-conjugated anti-CD11c (HL3), PE-conjugated and APC-conjugated anti-CD64 (X54-5/7.1), Alexa-Fluor 700-conjugated anti-MHC Class II (I-A/I-E) (M5/114.15.2), PECF594-conjugated anti-CD11c (HL3), Brilliant Violet 570-conjugated anti-Ly6G (1A8), Allophycocyanin-conjugated anti-CD64 (X54-5/7.1), PE Cy7-conjugated anti-CD24 (M1/69), Brilliant violet 650-conjugated anti-CD45.2 (104) and Brilliant violet 711-conjugated anti-CD45.1 (A20) were all from Biolegend. PE-conjugated anti-CCR2 (475301) was from R&D systems. The data were analyzed using the FlowJo software (Tree Star).
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6

Multiparametric Flow Cytometry Analysis of Immune Cell Subsets

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Single-cell suspensions were stained and analysed using a FACS LSRFortessa™ system (BD Biosciences). Dead cells were excluded with the LIVE/DEAD Fixable Violet Dead Cell staining kit (Life Technologies). The cells were then incubated for 10 minutes with purified rat anti-mouse CD16/CD32 (Biolegend, clone 93) and normal mouse serum (Interchim) before being stained with various monoclonal antibodies for 20 minutes in the dark on ice. For mouse cells, lineage-positive cells were excluded using the PerCP5.5-conjugated anti-CD3 (17A2), anti-NK1.1 (PK136), anti-CD19 (6D5), anti-Ly6G (1A8) (Biolegend). PerCP-conjugated anti-CCR3 (83103) added to the lineage staining to exclude eosinophils was from R&D. Alexa Fluor 700-conjugated anti-Ly6C (AL21) was from BD Pharmingen. PECF594-conjugated anti-CD11c (HL3) was from BD Horizon. Allophycocyanin-Cy7-conjugated anti-CD11b (M1/70), PE-Cy7 anti-CD8 (53-6.7), Brilliant violet 510-conjugated anti-MHC Class II (I-A/I-E) (M5/114.15.2), Brilliant violet 650-conjugated anti-CD45.2 (104), were all from Biolegend. PE-conjugated anti-CCR2 (475301) was from R&D systems. The data were analysed with Flowjo software V10.1 (TreeStar).
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