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8 protocols using mir 141 3p mimic

1

Transcriptional Regulation of miR-141-3p in Hyperglycemia

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The miR-141-3p siRNA, miR-141-3p mimic, and their corresponding controls were purchased from Shanghai GenePharma Co., Ltd. Cells (2×105 cells/ml) were transfected with Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) and divided into the following groups: i) NG; ii) HG; iii) HG + MALAT1 overexpression; iv) HG + miR-141-3p siRNA scramble control (NC3), cells were transfected with 10 nM miR-141-3p siRNA scramble control (5′-ACGUGACACGUUCGGAGAATT-3′) at 37°C for 24 h, according to previous study (21 (link)), then cultured in HG medium for 24 h; v) HG + miR-141-3p siRNA (si-miR), cells were transfected with 10 nM miR-141-3p siRNA (5′-CCAUCUUUACCAGACAGUGUUA-3′) at 37°C for 24 h, then cultured in HG medium for 24 h; vi) HG + MALAT1 overexpression + miR-141-3p overexpression scramble control (MALAT1 + NC4), cells were transfected with 10 nM miR-141-3p mimic scramble control (5′-ACGUGACACGUUCGGAGAATT-3′) and 50 nM pcDNA3.1-MALAT1 at 37°C for 24 h, then cultured in HG medium for 24 h; and vii) HG + MALAT1 overexpression + miR-141-3p overexpression (MALAT1 + miR), cells were transfected with 10 nM miR-141-3p mimic (5′-UAACACUGUCUGGUAAAGAUGG-3′) and 50 nM pcDNA3.1-MALAT1 at 37°C for 24 h, then cultured in HG medium for 24 h. Transfection efficiency was determined via RT-qPCR.
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2

Validating miR-141-3p-PTEN Interaction

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The binding sites of miR-141-3p and phosphatase and tension homolog (PTEN) were predicted through ENCORI StarBase (http://starbase.sysu.edu.cn/index.php). The complementary sequence and mutant sequence of miR-141-3p and PTEN were amplified and cloned onto pmiR-GLO luciferase vectors (Promega, Madison, WI, USA) to construct wild-type plasmid (PTEN-WT) and corresponding mutant plasmid (PETN-MUT). The plasmids were cotransfected with mimic NC or miR-141-3p mimic (GenePharma, Shanghai, China) into HEK293T cells (Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, China). Luciferase activity was detected after 48 h of transfection.
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3

Validating miR-141-3p Interaction with EZH2

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Through the online database TargetScan (http://www.targetscan.org/vert_72/), the binding site of miR-141-3p and EZH2 was predicted. According to the predicted results, the wild sequence and mutant sequence (mut-EZH2, wt-EZH2) of the binding site were designed and synthesized, respectively. These sequences were inserted into the luciferase reporter gene vector (pGL3-Basic), respectively, and then cotransfected HEK293T cells with miR-141-3p mimic (0, 150 nM, 300 nM, GenePharma), respectively. After mixing well, 100 μl of cell lysis solution was added and the cells were allowed to fully lyse on a shaker for 20 min at room temperature. 50 μl of luciferase reaction solution (Promega, Madison WI, USA) was added to 50 μl of lysed cells to measure Firefly luciferase activity, while 50 μl of Stop & Glo reagent (Promega, USA) for detecting Renilla luciferase activity. Renilla luciferase activity was used as an internal reference, and the ratio of Firefly luciferase activity to Renilla luciferase activity was the relative activity of luciferase. Three replicates were set up for the experiment.
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4

Investigating INHBA-AS1 and miR-141-3p in hHSFs

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hHSFs (1 × 106 cells/well) were divided into 6-well plates and incubated for 24 h until 75% confluence. Short hairpin RNA (shRNA) against INHBA-AS1 (sh-INHBA-AS1-1 or sh-INHBA-AS1-2), scrambled negative control (shRNA-NC), miR-141-3p mimic (forward: 5ʹ-UAUUGCACAUUACUAAGUUGCA-3ʹ, reverse: 5ʹ-CAACUUAGUAAUGUGCAAUAUU-3ʹ), miR-141-3p inhibitor (5ʹ-UGCAACUUAGUAAUGUGCAAUA-3ʹ), mimic-NC (5ʹ-UUCUCCGAACGUGUCACUGUU-3ʹ) and inhibitor-NC (5ʹ-CAGUACUUUUGUGUAGUACAA-3ʹ), sh-MCL1-1, sh-MCL1-2 and sh-NC were provided by Genepharma (Shanghai, China). Transfection experiments were carried out by means of Lipofectamine® 3000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. Subsequent experiments were performed 24 h following transfection.
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5

Transfection of miR-141-3p Modulators

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The miR-141-3p inhibitor, miR-141-3p mimics, and the homologous negative control were obtained from GenePharma (Shanghai, China). The cells were transfected with Lipofectamine 2000 reagent (Invitrogen, CA, USA) at the final concentration of 50–100 mM according to the manufacturer’s instructions. Treatments were applied to cells 6 hr later.
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6

Modulating miR-141-3p and ZEB1-AS1 in Lung Cells

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The miR-141-3p inhibitor, miR-141-3p mimics, and homologous negative control were obtained from GenePharma (Shanghai, China). RLE-6TN cells were transfected above oligonucleotides using Lipofectamine 2000 reagent (Invitrogen) at the final concentration of 50–100 mM following the manufacturer’s instructions. Lentiviral short hairpin RNA (shRNA) vector as well as shRNA negative control (sh-NC) vector were commercially serviced by GeneChem Inc. (Shanghai, China). The shRNA targeting ZEB1-AS1 was 5ʹ-CCGGGCGCTCCTGTTTATGTACTTACTCGAGTAAGTACAT AAACAGGAGCGCTTTTTTG-3ʹ. RLE-6TN cells were transfected with sh-NC and sh-ZEB1-AS1 [multiplicity of infection = 100] diluted by Enhanced Infection Solution (ENi.S, pH 7.4). RT-qPCR was used to validate the transfection efficiency.
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7

Regulation of Cell Metabolism by LDHB and FUS

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Specific shRNAs against LDHB (sh-LDHB#1/2) or FUS (sh-FUS#1/2) and NC-shRNAs (sh-NC), along with pcDNA3.1/FUS (OE-FUS), pcDNA3.1/LDHB (OE-LDHB) and the empty vector (OE-NC), were acquired from Genechem (Shanghai, China). Moreover, miR-141-3p mimics and NC mimics were obtained from GenePharma (Shanghai, China). Plasmids were separately transfected into Saos-2 or HOS cells through Lipofectamine 3000 (Invitrogen, Carlsbad, CA, U.S.A.).
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8

Knockdown of ZEB1-AS1 in CRC Cells

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Specific shRNAs against ZEB1-AS1 (sh-ZEB1-AS1#1 and sh-ZEB1-AS1#2) and corresponding NCs (sh-NCs) were acquired from RiboBio (Guangzhou, China). Moreover, miR-141-3p mimics, miR-141-3p inhibitors, NC mimics and NC inhibitors were acquired from GenePharma (Shanghai, China). SW480 or LOVO cells were transfected with these plasmids through Lipofectamine 3000 (Invitrogen, CA, USA), separately.
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