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3 protocols using splicing xbp1

1

Quantifying ER Stress Pathway Activation

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Cell lysates were prepared in RIPA lysis buffer containing phenylmethylsulfonyl fluoride (PMSF). The protein samples were separated by 10% sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE), then were transferred onto the polyvinylidene fluoride (PVDF) membrane. The membrane was then blocked with 5% non-fat dry milk for 1 h. Primary rabbit antibodies include anti-Bip (1:1000, Cell Signaling), anti-CHOP (1:1000, Cell Signaling), anti-PERK (1:1000, Cell Signaling), phospho-PERK (1:1000, Invitrogen), IRE1-α (1:1000, Cell Signaling), p-IRE1-α (1:1000; Invitrogen), splicing XBP1 (1:1000, Cell Signaling), ATF6 (1:1000, Cell Signaling). HRP-conjugated anti-rabbit and anti-mouse secondary antibodies were used and the chemiluminescent signal was detected by using electrochemiluminescence (ECL) reagents (Invitrogen).
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2

Western Blot Analysis of UPR Markers

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Cell lysates were prepared in RIPA lysis buffer containing phenylmethylsulfonyl fluoride (PMSF). The protein samples were separated by 10% sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) and then were transferred onto the polyvinylidene fluoride (PVDF) membrane. The membrane was then blocked with 5% nonfat dry milk for 1 h. Primary rabbit antibodies include anti-β-actin (1 : 1000, Cell Signaling), anti-CHOP (1 : 1000, Cell Signaling), anti-PERK (1 : 1000, Cell Signaling), phospho-PERK (1 : 1000, Invitrogen), IRE1-α (1 : 1000, Cell Signaling), p-IRE1-α (1 : 1000; Invitrogen), and splicing XBP1 (1 : 1000, Cell Signaling). HRP-conjugated anti-rabbit secondary antibodies were used, and the chemiluminescent signal was detected by using electrochemiluminescence (ECL) reagents.
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3

Immunohistochemical Analysis of Tumor Microenvironment

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The mice were sacrificed 48 hours after irradiation. Tumor tissues and spleen tissues were fixed in paraffin, imbedded, and cut for 4 mm sections. Tumor sections were incubated with primary antibodies, including anti-mouse CD4 (1 : 100, Cell Signaling), CD8 (1 : 100, Cell Signaling), CD11c (1 : 100, Cell Signaling), FoxP3 (1 : 100, Cell Signaling), CHOP (1 : 100, Cell Signaling), phospho-PERK (1 : 100, Invitrogen), p-IRE1-α (1 : 100; Invitrogen), and splicing XBP1 (1 : 100, Cell Signaling) antibodies, at 4°C overnight, and biotin-labeled secondary antibody for 30 min at 37°C. The final signal was developed using the 3,3′-diaminobenzidine (DAB) substrate, and the sections were observed under optical microscope. The percentage of positive cells was calculated as number of positive (brown) cells/total number of cells × 100 in 9 randomly selected fields (400×).
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