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Alexa fluor 488 dbco

Manufactured by Vector Laboratories
Sourced in United States, Azerbaijan

Alexa Fluor 488 DBCO is a fluorescent dye that can be used for labeling of biomolecules. It features a dibenzocyclooctyne (DBCO) functional group, which allows for copper-free click chemistry reactions with azide-modified compounds.

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2 protocols using alexa fluor 488 dbco

1

Conjugation of Antibodies with Drug-Linker and Fluorescent Payloads

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DAR2-ARC-IgG and DAR4-ARC-IgG at above 10 μM stock concentrations were combined with the drug-linker conjugate (2′-Cl-araNAD+-MMAF) in Tris buffer (50 mM Tris, pH 8.5) at a final molar concentration ratio of 1:200 (antibody : drug-linker conjugate) on ice for 1 hour. Then, buffer exchange was performed using PBS and filters with 30 kDa cut-off (MilliporeSigma, MA, USA) to remove free drug-linker conjugate.
To generate ADC surrogates with Alexa Fluor 488 or FITC as the payload, the linker 2′-Cl-araNAD+-N3 was first conjugated to DAR2-ARC-IgG or DAR4-ARC-IgG with the same method described above. Then, acquired fusion antibody-linkers were incubated with Alexa Fluor 488 DBCO (Click Chemistry Tools, AZ, USA) or DBCO-PEG3-FITC (CONJU-PROBE, CA, USA) in PBS buffer (pH 7.4) at a molar ratio of 1:50 (antibody-linker : fluorescent dye) for 30 minutes on ice. Finally, buffer exchange was performed using PBS (pH 7.4) and filters with 30 kDa cut-off to remove free surrogate payloads. The concentrations of generated ADCs and ADCs surrogates were determined by Bradford assay kits (Thermo Fisher Scientific, MA, USA).
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2

Click Labeling of Fc Variants

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CD38 C-fusion IgG, CD38 C-fusion IgG E226Q mutant, and Herceptin IgG (2 μM) were first incubated in the absence or presence of 40 μM 2′-Cl-araNAD+-N3 in 50 mM tris buffer (pH 8.5) for 2 hours on ice. The reaction mixtures were then added with Alexa Fluor 488 DBCO (Click Chemistry Tools, AZ) at final concentrations of 200 μM and kept on ice for 0.5 hour before SDS-PAGE analysis. The SDS-PAGE gels were first imaged with ChemiDoc Touch (Bio-Rad, CA) imager for the fluorescence of Alexa Fluor 488 and then stained with Coomassie blue for white-light imaging.
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