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139 protocols using toc l

1

Comprehensive Groundwater Quality Assessment

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A total of 15 wells were sampled, among them 2 were covered open wells, and the rest were tube wells. For open well sampling, grab sampling technique was used; for tube well sampling, water was sampled only after the existing water in the tube was completely replaced by a large volume of fresh water [15 (link)]. All samples were collected in the morning, when maximum water usage was reached for the local community [15 (link)]. Duplicate samples per well were collected. Samples were saved in clean and sterile polypropylene containers and transported to the laboratory on ice, and their characterization was done within 6 h of collection.
Total organic carbon (TOC) and total nitrogen (TN) in water samples were determined by TOC (TOC-L, Shimazu, Japan), NH4+–N was determined by Nessler’s reagent spectrophotometry method, NO3–N was quantified by double wavelength ultraviolet spectroscopy method. Total phosphorus (TP) was quantified by potassium persulfate oxidation coupled with ammonium phosphomolybdate colorimetry. Total soluble iron (Fe) was examined by ascorbic acid reduction–phenanthroline spectrophotometric analysis method. Total plate counting (TPC) was conducted to numerate bacteria well water samples (data not shown due to the lack of significant correlation with ttds). The results of well water characterization were shown in Table 1.
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2

Protein Content Determination by TOC

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The protein content (g L−1) was determined by a total organic carbon analyzer (TOC-L, Shimazu, Japan). The TOC analyzer automatically measures all nitrogen concentrations in the sample, including non-protein nitrogenous substances such as caffeine, chlorophyll, and theobromine. According to a previous study (Zhang et al., 2015 (link)), a conversion factor of 5.4 was used to calculate the protein concentration.
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3

Soil Characterization and Microbial Analysis

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Each of the seven soil samples was divided into three aliquots as replicates for MFCs operation. Before the operation, soil physiochemical properties of each aliquot were analyzed using routine methods (Page et al., 1982 ). Briefly, soil texture was determined by the sieve and pipette method. Soil maximum water holding capacity (MWHC) was determined by the difference between dry and soaked soil weights. Soil pH was measured at 1:2.5 (soil:water) and soil electrical conductivity (EC) at 1:5 (soil:water). Soil cation exchange capacity (CEC) was analyzed by the compulsive exchange method. Soil organic carbon (OC) was determined by K2CrO4 oxidation; total nitrogen (TN) by Kjeldahl digestion; and total phosphorus (TP) by colorimetry following NaOH digestion. Dissolved organic carbon (DOC; extracted by 0.5 M K2SO4) and humic carbon (HC; extracted by 0.1 M Na4P2O7 and 0.1 M NaOH) were measured using a TOC analyzer (TOC-L, Shimadzu, Kyoto, Japan). Soil total dissolved iron (DFeT) was extracted by 0.2 M H2C2O4-(NH4)2C2O4 (McKeague and Day, 1966 (link)) and measured by flame atomic absorption spectroscopy (AA240, Agilent Technologies, Santa Clara, CA, USA). Soil microbial biomass carbon (MBC) was measured by the fumigation-extraction method (Vance et al., 1987 (link)).
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4

Quantification of Cyanotoxin Production

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Cultures grown on different N sources were collected at exponential growth phase for toxin analysis and particulate organic C (POC) measurement. Major toxin congeners (i.e. MC-LR, D-Asp MC-LR, and MC-HilR) were quantified using ultra-high performance liquid chromatography – mass spectrometry (UHPLC–MS) at University of Toledo following previously published protocols [46–48 (link)]. To compare MC production between cultures, POC concentrations of each culture were determined using a TOC analyzer (Shimadzu TOC-L equipped with an SSM-5000 solid state module, Shimadzu, Japan) to normalize the MC concentrations. Detailed procedures can be found in the Supplemental Material. Tukey’s HSD method was carried out to compare the effect of microbiomes and N sources.
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5

Quantifying Aquatic Nutrients and Chlorophyll a

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Samples were filtered through glass fibre filters with 0.4 μm nominal porosity (GF‐5, Macherey‐Nagel, Düren, Germany). Concentrations of soluble reactive phosphorus (SRP) were determined spectrophotometrically (Kopáček & Hejzlar, 1993 ; Murphy & Riley, 1962 ). Concentrations of nitrate and ammonium were measured according to Procházková (Procházková, 1959 ) and Kopáček and Procházková (Kopáček & Procházková, 1993 ). DOC and dissolved nitrogen (DN) were determined by catalytic thermal combustion at 720°C in combination with chemiluminescence detection by Shimadzu TOC‐L equipped with TNM‐L Total Nitrogen module (Shimadzu, Kyoto, Japan).
For Chl‐a measurements, phytoplankton was collected by filtration onto GF‐5 glass fibre filters (Macherey‐Nagel). The filters were dried of excess water by gently pressing in a paper towel, and flush frozen in liquid nitrogen. Pigments were extracted in acetone‐methanol (7:2, v:v) mixture and analysed by HPLC as described in (Piwosz et al., 2020 ).
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6

Cryoconite Organic Carbon Analysis

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The total organic carbon (TOC) contents of the samples were determined using a TOC-L (Shimadzu Corp., Kyoto, Japan) on lyophilized samples. Total nitrogen (TN) and total carbon (TC) were measured using an elemental analyzer (Vario MAX, Elementar, Germany). The elemental concentrations are reported as the percentage of dry weight (100°C for 24 h) of cryoconite material.
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7

Characterizing Organic Matter Composition

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LC-OCD analysis was performed using a Toyopearl TSK HW-50S column (Tosoh Bioscience, King of Prussia, PA, USA) and an infrared detector (DOC-Labor Dr. Huber, Karlsruhe, Germany). LC-OCD data was processed using Fiffikus software (DOC-Labor Dr. Huber, version 2008-08-22) in accordance with established protocols (Huber et al., 2011 (link)), with organic compounds divided into humics, building blocks, lower-molecular weight (LMW) organics, and neutrals. The humic fraction mirrors natural humic substances. Building blocks are smaller, but have similar structure to humics, suggesting they are subunits of humics or degradation products. LMW organics are smaller still, and comprised of acids and humics. The neutrals fraction contains LMW compounds that are either weakly charged or only slightly hydrophobic. DOC was monitored using a dedicated TOC/DOC machine (TOC-L, Shimadzu, Kyoto, Japan) for full-scale testing and the LC-OCD detector for batch testing. Detailed procedures for LC-OCD and DOC protocols are presented in Supporting information Section S.3.
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8

Comprehensive Characterization of Synthesized Products

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Phase purity and crystallite size of synthesized products were analyzed by Bruker D8 Advance powder X-Ray Diffractometer (Bruker AXS GmbH, Karlsruhe, Germany) with CuKa source. The morphology and particle size of synthesized products were examined using Transmission Electron Spectroscopy (TEM). TEM has been recorded employing JEOL JEM 3010 electron microscope (JEOL Ltd., Tokyo, Japan). Photoluminescence spectrum (PL) was recorded using Hitachi F-7000 Fluorescence spectrophotometer with 150 W Xe lamp as excitation source. The slit width at excitation and emission were 5 nm. UV-Visible spectra were recorded at room temperature using Jasco V 570 UV-Vis spectrophotometer. X-Ray photoelectron spectroscopic analysis was done using K-Alpha instrument (XPS K-Alpha surface analysis, Thermo fisher scientific, UK). X-band EPR was recorded using Varian E 112 at room temperature. Total Organic Content (TOC) was measured using Shimadzu TOC-L.
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9

Aqueous Nutrient and Chlorine Analysis

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Samples for dissolved organic carbon (DOC), nitrite, nitrate and ammonium measurements were filtered at 0.45 μm (Nanocolor Chromafil membrane filter GF/PET 0.45 μm, Macherey Nagel, Düren, Germany) for sample conservation and stored at 4°C before the chemical analysis. DOC was measured using a total organic carbon analyzer (Shimadzu TOC-L, Kyoto, Japan). Ammonium was measured by gas-diffusion flow injection (Foss, Hillerød, Demark). Nitrite and nitrate were measured by means of ion chromatography (Metrohm 881, Herisau, Switzerland).
Free and total chlorine were measured immediately after sampling using a portable spectrophotometer (DR 1900, Hach, Loveland, USA) with corresponding test kits (DPD, 0–2 mg/L free chlorine, Hach, Loveland, USA).
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10

Amorphadiene Production Under Nitrogen Limitation

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Cultivation in shake flasks was performed in 250 mL Erlenmeyer flasks filled with 50 mL of SMM medium and filter sterilized dodecane (10% v/v of the liquid phase). The cultures were inoculated with a starting OD600 of 0.1 from exponentially growing precultures on SMM medium. The flasks were incubated as biological duplicates at 30 °C under an agitation of 250 rpm. Growth was monitored by measuring the absorbance at 600 nm. For assessment of nitrogen limitation on production, SMM medium with different initial NH4Cl concentrations (0.25–1.0 g/L) was employed. Initial glucose concentration was set at 3 g/L. Amorphadiene was measured once glucose depleted, and the pellet composition was analysed using the Total Organic Carbon analyser (TOC-L, Shimadzu).
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