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6 protocols using rabbit anti pdgfr β

1

Renal Protein Extraction and Western Blot

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Renal tissue and cells were harvested and lysed by RIPA lysis buffer (Wuhan Goodbio Technology, China) containing cocktail protease inhibitors (Wuhan Goodbio Technology, China) for 30 min on ice. The total protein was obtained by high-speed centrifugation at low temperatures. Protein concentrations were quantified by a BCA protein assay kit (Beyotime Institute of Biotechnology, China), and 30 µg protein was loaded, separated on 10% or 12% SDS-PAGE, and transferred to nitrocellulose membranes. Then membranes were blotted at 4 °C overnight with mouse anti-VEGF-C (Santa Cruz, USA; 1:250), rabbit anti-Prox-1 (Angiobio, USA; 1:1000), rabbit anti-LYVE-1 (Novus, USA; 1:1000), Hamster anti-Podoplanin (Angiobio, USA; 1:200), rabbit anti-Collagen1 (Novus, USA; 1:2000), rabbit anti-α-SMA (Abcam, USA; 1:4000), rabbit anti-PDGFR-β (Abcam, USA; 1:2000), mouse anti-iNOS (Santa Cruz, USA; 1:200), rabbit anti-Arginase (Santa Cruz, USA; 1:400), rabbit anti-LC3B (Sigma-Aldrich, USA; 1:1000), rabbit anti-p62 (Abcam, USA; 1:5000), mouse anti-GAPDH (Wuhan Goodbio Technology, China; 1:2000), then were incubated with HRP-conjugated anti-IgG (Jackson ImmunoResearch, USA; 1:4000), finally were detected by ECL (Pierce, USA). Image capture and analysis were conducted by Bio-RAD (USA).
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2

Hippocampal and Cortical Protein Analysis

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The hippocampus and cortex of mice were extracted and lysed by RIPA buffer (Beyotime, P0013B, China) containing 1X halt™ protease and phosphatase inhibitor single-use cocktail (Invitrogen, 78,443). Afterward, Pierce™ BCA Protein Assay Kit (Invitrogen, 23,225) was used for quantitation. Samples were separated on SDS-PAGE gel and transferred to PVDF membranes (Millipore). Then we blocked the membranes with 5% milk for one hour at room temperature and incubated with primary antibodies. The primary antibodies we used include mouse-anti-β-Tubulin (1:5000, Proteintech, 66,240–1-Ig), rabbit-anti-PDGFRβ (1:1000, Abcam, ab32570), rabbit-anti-ZO1 (1:1000, ThermoFisher, 61–7300), rabbit-anti-Occludin (1:1000, ThermoFisher, 71–1500), rabbit-anti-Claudin-5 (1:1000, Abcam, ab131259), mouse-anti-tau5(1:5000, Invitrogen, AHB0042), and Phospho-Tau Family Antibody Sampler Kit (CST, 96628 T). Specific secondary HRP-linked antibodies (1:2000, Cell Signaling Technology, 7074S or 7076S) were subsequently incubated for an hour at room temperature.
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3

Immunofluorescent Staining of Mouse Brain

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After perfused with ice-cold PBS, the brain tissues of mice were harvested and fixed with 4% paraformaldehyde (PFA) at 4 °C overnight. Then 20%-30% sucrose solution was used for gradient dehydration until the brains sank to the bottom. Coronal Sects. (20 μm thick) were prepared by a freezing microtome (Leica, CryoStar NX50). After being washed with PBS three times, these brain slices were permeabilized with 0.1% Triton X-100 (Sigma) and blocked with 5% BSA (Sigma, A1933). After that, the slices were incubated with primary antibodies including mouse-anti-β-Amyloid (BioLegend, 803,004) and rabbit-anti-PDGFRβ (Abcam, ab32570) at 4 °C overnight. Appropriate secondary antibodies (1:1000, Jackson, USA), 4,6-diamidino-2-phenylindole (DAPI, 1:1000, CST, 4083S, USA) and Lectin with DyLight™ 649 Lycopersicon Esculentum (Tomato) (Vector, DL-1178–1) were used for further staining. Images were acquired with a fluorescence microscope (Leica DM6B, Germany).
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4

Immunofluorescence Staining of Brain Slices

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Brain slices prepared from the indicated groups of mice were subjected to double immunofluorescence staining. The primary antibodies used in our studies were mouse anti-β-amyloid (20.1) (1:25, Santa Cruz Biotechnology), rabbit anti-PDGFRβ (1:100, Abcam), and rabbit anti-CD36 (1:100 ABclonal). All images were obtained, and colocalization was visualized, using a Nikon confocal microscope.
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5

Western Blot Analysis of Protein Expression

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Cells were lysed in a protein extraction solution (Intron, Seongnam, South Korea). After centrifugation, the samples were boiled at 95 °C for 10 min, and 50 µg protein of each lysate was subjected to electrophoresis on 10% sodium dodecyl sulfate polyacrylamide gels. All samples were electroblotted on polyvinylidene fluoride membranes (Merck Millipore, Burlington, MA, USA) and, after blocking, the blots were incubated with appropriate rabbit anti-THBS4 (Santa Cruz Biotechnology, sc-390734), rabbit anti-PDGFRβ (Abcam, Cambridge, MA, USA, ab32570), mouse anti-phosphorylated PDGFRβ (Santa Cruz Biotechnology, sc-365464), rabbit anti-PDGF-D (Abcam, Cambridge, MA, USA, ab234666), mouse anti-IP3R (Santa Cruz Biotechnology, sc-271197), and rabbit anti-STIM1 (Cell Signaling Technology, Danvers, MA, USA, 5668S) antibodies in TBS-T (TBS-0.05% Tween 20) for 90 min, which was followed by washing three times with TBS-T for 15 min each, and incubation with horseradish peroxidase-conjugated anti-mouse or rabbit immunoglobulin G antibodies for 1 h. After further washing, the blots were incubated for 3 min with Western blotting HRP-substrate (Merck Millipore), and chemiluminescence was detected after exposure of the filters to ECL-Western blot films for 10 s to 10 min. Original Western blots are shown on Figures S7–S14.
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6

Immunofluorescence Staining of Cultured Cells

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Cells, cultured on glass coverslips, were fixed in fresh 4% paraformaldehyde in PBS (0.1 M sodium phosphate buffer, 0.9% NaCl, pH 7.4) and subsequently blocked with 10% goat serum in PBS for 30 min, then incubated overnight at 4 °C with primary antibodies diluted in blocking buffer. The following primary antibodies and dilutions were used: mouse anti-alpha-SMA, 1:200 (Sigma-Aldrich, #A2547); rabbit anti-CD31, 1:100 (abcam, Cambridge UK, #ab28364); rabbit anti-PDGFR-β 1:100 (abcam, #ab32570); rabbit anti-vWF, 1:200 (Santa Cruz Biotechnology, Dallas TX, #SC-365712); rabbit anti-calponin-1 1:100 (Millipore, Burlington MA, #04-589); rabbit anti-NG2 chondroitin sulfate proteoglycan, 1:100 (Millipore, #AB5320); rat anti-CD90, 1:200 (abcam, #ab3105), and mouse anti-3G5 McAb, 1:200 (prepared as described above from hybridoma cells, ATCC, #CRL-1814, stock concentration 2.96 µg/mL). Cells were washed with PBS + 0.1% Tween 20 and secondary antibody (Alexa 568-conjugated donkey anti-rabbit or IgG-Alexa 546-conjugated donkey anti-mouse (Life Technologies, Carlsbad CA, #A10042 and #A10036)) was applied in blocking buffer for 2 h at RT. Cell nuclei were labeled with Hoechst 33342 (Life Technologies). The coverslips were washed and mounted using ProLong Gold antifade reagent (Life Technologies, # P36935). Images were acquired with a confocal microscope (Nikon Eclipse Tie-A1RSi).
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