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138 protocols using cellulase

1

F6P Production from Cellulose Hydrolysis

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Example 5

To test for F6P production from Avicel, Sigma cellulase was used to hydrolyze cellulose at 50° C. To remove beta-glucosidase from commercial cellulase, 10 filter paper units/mL of cellulase was mixed to 10 g/L Avicel at an ice-water bath for 10 min. After centrifugation at 4° C., the supernatant containing beta-glucosidase was decanted. Avicel that was bound with cellulase containing endoglucanase and cellobiohydrolase was resuspended in a citrate buffer (pH 4.8) for hydrolysis at 50° C. for three days. The cellulose hydrolysate was mixed with 5 U/mL cellodextrin phosphorylase, 5 U/L cellobiose phosphorylase, 5 U/mL of αGP, 5 U/mL PGM, and 5 U/mL PGI in a 100 mM HEPES buffer (pH 7.2) containing 10 mM phosphate, 5 mM MgCl2 and 0.5 mM ZnCl2. The reaction was conducted at 60° C. for 72 hours and high concentrations of F6P were found (small amounts of glucose and no cellobiose). F6P was detected using the coupled enzyme assay described above. Glucose was detected using a hexokinase/G6PDH assay kit as described above.

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2

Cellulose to F6P Conversion Protocol

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Example 5

To test for F6P production from Avicel, Sigma cellulase was used to hydrolyze cellulose at 50° C. To remove beta-glucosidase from commercial cellulase, 10 filter paper units/mL of cellulase was mixed to 10 g/L Avicel at an ice-water bath for 10 min. After centrifugation at 4° C., the supernatant containing beta-glucosidase was decanted. Avicel that was bound with cellulase containing endoglucanase and cellobiohydrolase was resuspended in a citrate buffer (pH 4.8) for hydrolysis at 50° C. for three days. The cellulose hydrolysate was mixed with 5 U/mL cellodextrin phosphorylase, 5 U/L cellobiose phosphorylase, 5 U/mL of αGP, 5 U/mL PGM, and 5 U/mL PGI in a 100 mM HEPES buffer (pH 7.2) containing 10 mM phosphate, 5 mM MgCl2 and 0.5 mM ZnCl2. The reaction was conducted at 60° C. for 72 hours and high concentrations of F6P were found (small amounts of glucose and no cellobiose). F6P was detected using the coupled enzyme assay described above. Glucose was detected using a hexokinase/G6PDH assay kit as described above.

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3

Enzymatic Production of F6P from Avicel

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Example 5

To test for F6P production from Avicel, Sigma cellulase was used to hydrolyze cellulose at 50° C. To remove beta-glucosidase from commercial cellulase, 10 filter paper units/mL of cellulase was mixed to 10 g/L Avicel at an ice-water bath for 10 min. After centrifugation at 4° C., the supernatant containing beta-glucosidase was decanted. Avicel that was bound with cellulase containing endoglucanase and cellobiohydrolase was resuspended in a citrate buffer (pH 4.8) for hydrolysis at 50° C. for three days. The cellulose hydrolysate was mixed with 5 U/mL cellodextrin phosphorylase, 5 U/L cellobiose phosphorylase, 5 U/mL of αGP, 5 U/mL PGM, and 5 U/mL PGI in a 100 mM HEPES buffer (pH 7.2) containing 10 mM phosphate, 5 mM MgCl2 and 0.5 mM ZnCl2. The reaction was conducted at 60° C. for 72 hours and high concentrations of F6P were found (small amounts of glucose and no cellobiose). F6P was detected using the coupled enzyme assay described above. Glucose was detected using a hexokinase/G6PDH assay kit as described above.

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4

Cellulose to F6P Conversion Protocol

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Example 5

To test for F6P production from Avicel, Sigma cellulase was used to hydrolyze cellulose at 50° C. To remove beta-glucosidase from commercial cellulase, 10 filter paper units/mL of cellulase was mixed to 10 g/L Avicel at an ice-water bath for 10 min. After centrifugation at 4° C., the supernatant containing beta-glucosidase was decanted. Avicel that was bound with cellulase containing endoglucanase and cellobiohydrolase was resuspended in a citrate buffer (pH 4.8) for hydrolysis at 50° C. for three days. The cellulose hydrolysate was mixed with 5 U/mL cellodextrin phosphorylase, 5 U/L cellobiose phosphorylase, 5 U/mL of αGP, 5 U/mL PGM, and 5 U/mL PGI in a 100 mM HEPES buffer (pH 7.2) containing 10 mM phosphate, 5 mM MgCl2 and 0.5 mM ZnCl2. The reaction was conducted at 60° C. for 72 hours and high concentrations of F6P were found (small amounts of glucose and no cellobiose). F6P was detected using the coupled enzyme assay described above. Glucose was detected using a hexokinase/G6PDH assay kit as described above.

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5

Enzymatic Conversion of Cellulose to F6P

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Example 5

To test for F6P production from Avicel, Sigma cellulase was used to hydrolyze cellulose at 50° C. To remove beta-glucosidase from commercial cellulase, 10 filter paper units/mL of cellulase was mixed to 10 g/L Avicel at an ice-water bath for 10 min. After centrifugation at 4° C., the supernatant containing beta-glucosidase was decanted. Avicel that was bound with cellulase containing endoglucanase and cellobiohydrolase was resuspended in a citrate buffer (pH 4.8) for hydrolysis at 50° C. for three days. The cellulose hydrolysate was mixed with 5 U/mL cellodextrin phosphorylase, 5 U/L cellobiose phosphorylase, 5 U/mL of αGP, 5 U/mL PGM, and 5 U/mL PGI in a 100 mM HEPES buffer (pH 7.2) containing 10 mM phosphate, 5 mM MgCl2 and 0.5 mM ZnCl2. The reaction was conducted at 60° C. for 72 hours and high concentrations of F6P were found (small amounts of glucose and no cellobiose). F6P was detected using the coupled enzyme assay described above. Glucose was detected using a hexokinase/G6PDH assay kit as described above.

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6

F6P Production from Cellulose Hydrolysis

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Example 5

To test for F6P production from Avicel, Sigma cellulase was used to hydrolyze cellulose at 50° C. To remove beta-glucosidase from commercial cellulase, 10 filter paper units/mL of cellulase was mixed to 10 g/L Avicel at an ice-water bath for 10 min. After centrifugation at 4° C., the supernatant containing beta-glucosidase was decanted. Avicel that was bound with cellulase containing endoglucanase and cellobiohydrolase was resuspended in a citrate buffer (pH 4.8) for hydrolysis at 50° C. for three days. The cellulose hydrolysate was mixed with 5 U/mL cellodextrin phosphorylase, 5 U/L cellobiose phosphorylase, 5 U/mL of αGP, 5 U/mL PGM, and 5 U/mL PGI in a 100 mM HEPES buffer (pH 7.2) containing 10 mM phosphate, 5 mM MgCl2 and 0.5 mM ZnCl2. The reaction was conducted at 60° C. for 72 hours and high concentrations of F6P were found (small amounts of glucose and no cellobiose). F6P was detected using the coupled enzyme assay described above. Glucose was detected using a hexokinase/G6PDH assay kit as described above.

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7

Enzymatic Production of Fructose-6-Phosphate from Cellulose

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Example 5

To test for F6P production from Avicel, Sigma cellulase was used to hydrolyze cellulose at 50° C. To remove beta-glucosidase from commercial cellulase, 10 filter paper units/mL of cellulase was mixed to 10 g/L Avicel at an ice-water bath for 10 min. After centrifugation at 4° C., the supernatant containing beta-glucosidase was decanted. Avicel that was bound with cellulase containing endoglucanase and cellobiohydrolase was resuspended in a citrate buffer (pH 4.8) for hydrolysis at 50° C. for three days. The cellulose hydrolysate was mixed with 5 U/mL cellodextrin phosphorylase, 5 U/L cellobiose phosphorylase, 5 U/mL of αGP, 5 U/mL PGM, and 5 U/mL PGI in a 100 mM HEPES buffer (pH 7.2) containing 10 mM phosphate, 5 mM MgCl2 and 0.5 mM ZnCl2. The reaction was conducted at 60° C. for 72 hours and high concentrations of F6P were found (small amounts of glucose and no cellobiose). F6P was detected using the coupled enzyme assay described above. Glucose was detected using a hexokinase/G6PDH assay kit as described above.

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8

Glucose Release from Bacterial Cells

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A lawn of wild-type E. coli W, BL21 (DE3), H10407 and E2348/69 strains or their derivatives were scraped from the surface of LB agar or YESCA agar plates after 96 h at 37 °C or 25 °C. For each strain, ~30 mg of cells was transferred into 400 µl of 2.5 M 2-(N-Morpholino)-ethanesulfonic acid (MES) buffer pH 5.5 with or without 6 U/ml cellulase (Sigma, UK) and incubated at 37 °C overnight. Each sample was adjusted to a final turbidity of 40 at 600 nm with 2.5 mM MES pH 5.5 and then centrifuged at 5000×g for 20 min. The glucose concentration in each sample was measured using the glucose (HK) assay kit (Sigma, UK) and compared with data from none cellulase treated samples.
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9

Enzymatic Treatment for Chlorella Cell Wall Digestion

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Enzymatic treatment was performed as to previous study (Lu et al., 2012 (link)), with slight modifications. Log-phase Chlorella cells were harvested by centrifugation at 3000 rpm for 5 min, then the cell pellet was suspended in 25 mM Tris buffer (pH 6.0) containing the cell wall degrading enzymes and 0.6 M D-mannitol. Besides using the same combination of cellulase and snailase as described, a list of commercially available enzymes including cellulase (Sigma Cat. No. C1184 and Newprobe R-10), snailase (Newprobe), cellulysin (Calbiochem Cat. No. 219466), hemicellulase (Sigma Cat. No. H2125), pectinase (Sigma Cat. No. P2611), pectolyase (Sigma Cat. No. P3026), lysozyme (Sigma Cat. No. L6876), and zymolase (Zymoreseach Cat. No. E1005), were applied, either individually or in combination, so as to obtain the optimal digestion condition. Each treatment was kept at 30°C for 16 h. The cells were then harvested for further analysis.
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10

Comprehensive Reagents and Standards for Analytical Procedures

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The following reagents and standard substances were used in the tests: Acetonitrile HPLC grade, Methanol HPLC grade Chromasolv®, Sodium hexafluorophosphate (NaPF6) and Ammonium acetate. Cellulase and Pectinase were purchased from Sigma-Aldrich Chemie GmbH (Steinheim, Germany). HPLC grade water was purchased from Merck KGaA (Darmstad, Germany). LC-MS H2O (18 Ω) grade was purchased from Millipore Merck KGaA (Darmstadt, Germany). LC-MS acetonitrile grade was purchased from Merck. Chloroform, diethyl ether, sodium chloride, ethyl alcohol, formaldehyde 37% and glacial acetic were purchased from POCH (Gliwice, Poland). Bacto™ Agar was purchased from Becton, Dickinson & Company, (Franklin Lakes, New Jersey, USA). IAA, IBA and kinetin were purchased from Grand Island Biological Company (New York, USA). Plant Preservative Mixture (PPM) was purchased from Plant Cell Technology (Washington, D.C., USA). Toluidine Blue was purchased from Across Organics (Geel, Belgium). Periodic acid and Schiff’s reagent for microscopy was purchased from Merck KGaA. Huperzine A and Huperzine B standards were purchased from ChromaDex Inc. (Laguna Hills, CA, USA).
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