The largest database of trusted experimental protocols

Dapi containing media

Manufactured by Vector Laboratories
Sourced in United States

DAPI-containing media is a solution that includes the fluorescent dye 4',6-diamidino-2-phenylindole (DAPI). DAPI binds to the minor groove of DNA and emits blue fluorescence when excited by ultraviolet light. This media is commonly used in microscopy and flow cytometry applications to stain and visualize cell nuclei.

Automatically generated - may contain errors

12 protocols using dapi containing media

1

Fluorescent Dye Labeling of Mouse Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Three mice from the four experimental groups were perfused intracardially with saline-heparin solution for 2 min, followed by perfusion with PFA 1.5% in 0.1M phosphate buffer. Whole brains were dissected and post-fixed in PFA 1.5% for 1 hr and then transferred in PBS 0.1M. Coronal sections (200 μm) were collected using a vibratome. Fine powder of DIL crystals (1,1’-Dioctadecyl-3,3,3’,3’-Tetramethylindocarbocyanine Perchlorate, Invitrogen) were suspended in PBS and applied directly to coronal sections for 15 min. Slides were rinsed and kept in PBS at 4°C for 72 hr. Coronal sections were then post-fixed for 30 min in PFA 1.5%. Sections were mounted and cover-slipped with DAPI containing media (Vector laboratories, Burlingame, CA, USA).
+ Open protocol
+ Expand
2

Immunofluorescence Staining of Cultured Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary cultured cells were rinsed with PBS three times for five minutes each, fixed in 4% paraformaldehyde/4% sucrose in PBS for 15 minutes, and permeabilized in PBS with 0.3% triton X-100 (PBS-T) for 10 minutes. Non-specific binding of antibodies was blocked by incubating cells with 1% bovine serum albumin (BSA, Sigma-Aldrich) and 5% normal goat serum (Vector Laboratories Inc. Burlingame, CA, USA) in PBS-T for one hour. Cells were stained with primary antibodies overnight at 4°C. After washing three times in PBS five minutes each, cells were incubated with appropriate secondary antibodies (Alexa Fluor® 488 goat anti-rabbit IgG, 1:500, Invitrogen; Alexa Fluor® 555 goat anti-mouse IgG, 1:500, Invitrogen; Alexa Fluor® 488 goat anti-rabbit IgG, 1:500, Invitrogen; Alexa Fluor® 555 goat anti-chicken IgG, 1:1000, Invitrogen) for one hour in the dark. Coverslips were then mounted with DAPI containing media (Vector Laboratories).
+ Open protocol
+ Expand
3

H. pylori Binding to Gastric Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To visualize the binding of H. pylori to gastric cells, 1 × 105 MKN45 and NUGC-4 gastric cancer cells were seeded on coverslips and grown for 24 h. CFSE-labeled wild type H. pylori, or isogenic mutant strains, were added at an MOI of 10 and co-incubated with the cells for 3 h. Infected cells were fixed with methanol/acetone, stained with phalloidin (red, actin), and mounted with DAPI-containing media (Vector Labs, Burlingame, CA, USA). Images were taken using an SP5 confocal microscope (Leica, Wetzlar, Germany).
+ Open protocol
+ Expand
4

Fluorescent Dye Labeling of Mouse Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Three mice from the four experimental groups were perfused intracardially with saline-heparin solution for 2 min, followed by perfusion with PFA 1.5% in 0.1M phosphate buffer. Whole brains were dissected and post-fixed in PFA 1.5% for 1 hr and then transferred in PBS 0.1M. Coronal sections (200 μm) were collected using a vibratome. Fine powder of DIL crystals (1,1’-Dioctadecyl-3,3,3’,3’-Tetramethylindocarbocyanine Perchlorate, Invitrogen) were suspended in PBS and applied directly to coronal sections for 15 min. Slides were rinsed and kept in PBS at 4°C for 72 hr. Coronal sections were then post-fixed for 30 min in PFA 1.5%. Sections were mounted and cover-slipped with DAPI containing media (Vector laboratories, Burlingame, CA, USA).
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of PDAC Liver Metastases

Check if the same lab product or an alternative is used in the 5 most similar protocols
Twenty cases of PDAC liver metastases and adjacent livers tissues were obtained from Ren Ji hospital from January 2015 to June 2018 (Supplementary Table 1). The study was conducted in accordance with International Ethical Guidelines for Biomedical Research Involving Human Subjects (CIOMS). The study was approved by the Research Ethics Committee of Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University. All patients had not received radiotherapy, chemotherapy, hormone therapy or other related antitumor therapies before surgery. Written informed consent was provided before enrollment. Hematoxylin and eosin (H&E) staining was performed routinely and observed with Leica Aperio ScanScope Console 12.3. For immunofluorescence staining, paraffin sections were dewaxed with gradient ethanol, steam heated for antigen retrieval in citrate-based buffer, blocked with PBS containing 10%BSA for 1 h, stained with anti-P2RX1 (Alomone, 1:200), and CD66b (Biologend, 1:1000), Ly6G (Biolegend, 1:1000), or citrullinated histone H3 (CitH3) (Alomone, 1:200) overnight and secondary antibody (Abcam, 1:1000) for 2 hr and finally mounted in DAPI-containing media (Vector Labs) for imaging on a laser scanning confocal microscope (Leica SP8 LAS X).
+ Open protocol
+ Expand
6

Immunostaining of Adult Fly Digestive Tract

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult female flies were dissected in PBS. All the digestive tract was removed and fixed in PBS and 4% electron microscopy grade paraformaldehyde (Polysciences, USA) for 40 minutes. Samples were rinsed 3 times with PBS, 4% BSA, 0.1% Triton X-100 (PBT-BSA), incubated with the primary antibody overnight at 4 °C and with the secondary antibody for 2 hours at room temperature. Finally, the samples were rinsed 3 times with PBT-BSA and mounted in DAPI-containing media (Vectashield, USA). All the steps were performed without mechanical agitation. Primary antibody mouse α-Pros (1:100) was obtained from the Developmental Studies Hybridoma Bank (DSHB). Secondary antibodies were from Invitrogen (USA). Images were obtained on a Leica SPE or Leica SP5 confocal microscopy and processed in Photoshop CS5 (Adobe, USA).
+ Open protocol
+ Expand
7

Immunofluorescence Analysis of Tumor Hypoxia

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunofluorescence detection of hypoxic regions was performed as previously
described (22 ). Briefly, SCID mice bearing
3-week-old orthotopic MGG123 xenografts were given intraperitoneal injection of 60 mg/kg
Hypoxyprobe (pimonidazole hydrochloride). One hour later mice were euthanized,
cardiac-perfused with 4% paraformaldehyde, the brains removed, and frozen sections
obtained. Slides were stained with anti-Hypoxyprobe (1:50) and anti-CD34 (Abcam, 1: 100),
followed by incubation with Alexa Fluor 488 goat anti-mouse IgG and Alexa Fluor 546 goat
anti-rat IgG (both from Invitrogen). Slides were then mounted with DAPI-containing media
(Vector Laboratories) before microscopic observation. Images were captured using SPOT
imaging software.
+ Open protocol
+ Expand
8

Immunofluorescent Staining of Conjunctival Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Conjunctival tissues excised from mice were fixed in 4% (v/v) paraformaldehyde (PFA, Sigma-Aldrich) for 1.5 hours and thoroughly washed. The samples were then blocked with 5% goat serum (Sigma-Aldrich) for 30 minutes and subsequently stained with rabbit anti-mouse ALDH1 (Abcam) and rat anti-mouse MHC-II (eBioscience) primary antibody in 5% (v/v) goat serum (Invitrogen) for 48 hours at 4°C in the dark. Samples were thoroughly washed and stained with goat anti-rabbit Alexa fluor 633 (Invitrogen) and goat anti-rat Alexa fluor 488 (Invitrogen) secondary antibody in 5% (v/v) goat serum and incubated for 1 hour at room temperature. Samples were thoroughly washed and mounted with DAPI-containing media (Vector Laboratories). Images were captured using a Leica SP5 (Leica Microsystems), followed by image analysis with Leica LAS AF lite software.
+ Open protocol
+ Expand
9

Immunofluorescence Analysis of Drosophila Digestive Tract

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult female flies were dissected in phosphate-buffered saline (PBS). All whole digestive tract was removed and fixed in PBS and 4% electron microscopic-grade paraformaldehyde (Polysciences, USA) for 35 min. Samples were rinsed 3 times with PBS, 4% bovine serum albumin (BSA), and 0.1% Triton X-100 (PBT-BSA) and incubated with the primary antibody overnight at 4 °C and with the secondary antibody for 2 h at room temperature. Finally, the samples were rinsed 3 times with PBT-BSA and mounted in DAPI-containing media (Vectashield, USA). All the steps were performed without mechanical agitation. Primary antibodies were goat anti-GFP (1:500; Abcam, ab6673) and rabbit anti-Laminin (1:500, Abcam, ab47651). Secondary antibodies were from Invitrogen (USA). Phalloidin (Sigma, USA, P1951) was used at 5 μg/ml. Confocal image were acquired with a Zeiss LSM 880. Images were analysed with the Fiji software [National Institutes of Health (NIH) Bethesda, MD] and assembled into figures using Fiji, the Adobe Photoshop software, and Microsoft Powerpoint.
+ Open protocol
+ Expand
10

Immunohistochemical Analysis of Drosophila Digestive Tract

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult female flies were dissected in PBS. All the digestive tract was removed and fixed in PBS and 4% electron microscopy grade paraformaldehyde (Polysciences, USA) for 35 minutes. Samples were rinsed 3 times with PBS, 4% BSA, 0.1% Triton X-100 (PBT-BSA), incubated with the primary antibody overnight at 4°C and with the secondary antibody for 2 hours at room temperature. Finally, the samples were rinsed 3 times with PBT-BSA and mounted in DAPI-containing media (Vectashield, USA). All the steps were performed without mechanical agitation. Primary antibodies mouse α-Pros (1:100), α-Dl (1:10), α-Arm (1:10), α-Dlg (1:250) and α-Sn (1:50) were obtained from the Developmental Studies Hybridoma Bank (DSHB), rabbit α-PH 3 (1:100) from Cell Signalling (USA), rabbit α-Pdm1 (1:1000) was a gift of Dr.Yang Xiaohang (Institute of Molecular and Cell Biology, Singapore), rabbit α-laminin (1:1000) was from Sigma (USA) and goat α-GFP (1:500) was form Abcam (UK). Secondary antibodies were from Invitrogen (USA). TRICT-conjugated Phalloidin (Sigma, USA) was used at 5 µg/ml. Images were obtained on a Leica SPE or Leica SP5 confocal microscopy and processed in Photoshop CS5 (Adobe, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!