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16 protocols using injectman

1

Folate-induced Chemotaxis Assay

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Undifferentiated Ax2 and erkB- amoebae were harvested from K. aerogenes clearing plates and washed six times in KK2-MC to remove bacteria. Cells were resuspended at 2x107 cells/ml and shaken in suspension for 30 minutes before being washed again then diluted in KK2-MC and placed in a modified 2-well chambered coverglass (Nunc Lab-tek) with cut-down sides. Cells were left to settle for 30 minutes before filming using a Zeiss Axiovert S100 inverted microscope with 20x phase contrast objective. A micropipette (Eppendorf Femtotip II) filled with 100 μM folate was placed in the centre of the field of view just above the plane of the coverglass using a micromanipulator (Eppendorf Injectman and Femtojet). Cell movement was imaged at 2 frames per minute for a 40 minutes period. Cells were tracked using the manual tracking plugin of FIJI ImageJ (https://fiji.sc/) and chemotaxis parameters extracted using the Ibidi chemotaxis tool software (Ibidi).
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2

Microinjection of Denatured snRNA into HeLa Cells

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HeLa cells were grown on glass coverslips and RNA was microinjected using InjectMan coupled with FemtoJet (Eppendorf) as described previously30 (link),95 . For microinjection of denatured U2WT snRNA, RNA was incubated at 98 °C for 5 min and immediately microinjected into the HeLa cells. After 1 h incubation period, cells were rinsed twice with PBS and fixed for 20 min at room temperature in 4% PFA/PIPES (freshly prepared).
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3

Microinjection of Fluorescent Proteins

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Microneedles were prepared from capillaries with an outer/inner diameter of 1.2/0.94 mm (Harvard Apparatus, Cambridge, UK) in Sutter P-2000 (Sutter instruments, Novato, CA, USA). The protein was centrifuged at 20000 × g for 1 h before injection to remove small aggregates. The protein solution was back loaded into the needle, and the needle was installed into the micromanipulator InjectMan (Eppendorf, Hamburg, Germany). The micromanipulator was installed on the microscope allowing for immediate fluorescence microscopy after the injection and was connected to the microinjector FemtoJet (Eppendorf, Germany). The microinjection was performed at 20–30 hPa injection pressure, 0.1 s injection time, and a compensatory pressure of 20–25 hPa. Preliminary experiments were performed to estimate the injection volume. The fluorescence intensity of the diluted protein solution was measured using the same microscopy settings (laser power, gain, objective) as with the injection experiments. At a dilution of ca. 50 times the fluorescence intensity was comparable to the median intensity in the cells after injection of the labeled MTS-SNAP-tag, thus the injected volume was estimated to be 1–4% of the cell volume, fluctuating between the cells due to variation in the injected volume and the cell volume.
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4

Nuclear Removal and Nuclei Labeling

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The nucleus was removed from NIH 3T3 or MDA-MB-231 cells by using a 0.5 µm micropipette tip (Femtotip; Eppendorf North America, Hauppauge, NY) as a scalpel. The micropipette tip was controlled with an Eppendorf InjectMan micromanipulator system. SYTO11 dye (ThermoFisher) was used at manufacturer-recommended concentrations to label the nuclei of MDA-MB-231 cells.
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5

Microinjection-based Titration and Activity Assay for miRNA

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Cells grown on DeltaT dishes (Bioptechs, # 0420042105C) were microinjected as described (Pitchiaya et al., 2012 (link); Pitchiaya et al., 2013 (link), Pitchiaya et al., 2017 (link)). Briefly, injection solutions contained the appropriate miRNA at 1 μM concentration, 1x PBS and 0.5 mg/mL of 10 kDa cascade blue conjugated dextran (CB-Dex, Thermo-Fisher, # D1976). For microinjection based titration assays solution with 0 – 0.1 μM, 1x PBS and 0.1 mg/mL of 500 kDa cascade blue conjugated dextran (FITC-Dex, Thermo-Fisher, # D7136). For microinjection based miRNA activity assay, mRNAs were added at a stoichiometric amount based on the number of miRNA binding sites, for instance, 0.16 μM of RL-cx6x mRNA, bearing 6 cxcr4 binding sites, was added along with 1 μM cxcr4 miRNA. Solutions were filtered through a 0.45 μm Ultrafree-MC filter (Millipore, # UFC30HV00) and then centrifuged at 16,000 × g for 15min at 4 °C immediately before injection. The solution was loaded into a femtotip (Eppendorf, # E5242952008). Injections were performed using a Femtojet pump (Eppendorf) and an Injectman (Eppendorf) mounted to the microscope. Microinjections were performed at 100 hPa injection pressure for 0.5 s with 20 hPa compensation pressure. This pressure translates to a volume of 0.02 pL and 10,000–20,000 miRNA molecules.
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6

Generating Transgenic Fly Lines

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To generate the UAS-PV and UAS-GluRIIB transgenes, we obtained the cDNAs of PV from Addgene (#17301) and GluRIIB from the Drosophila Genomics Resource Center (DGRC #1374682). We inserted the PV and GluRIIB cDNA sequences into the pACU2 vector37 (link) (#31223; Addgene). To generate SynapGCaMP8f (MHC-CD8-GCaMP8f-Sh), we obtained the SynapGCaMP6f transgenic construct24 (link) and replaced the sequence encoding GCaMP6f with the GCaMP8f40 sequence (#162379; Addgene) using Gibson assembly as described39 . Transgenic stocks were generated by Bestgene, Inc (Chino Hills, CA 91709, USA) and inserted into w1118 (#5905, BDSC) fly strains by P-element-mediated random insertion. To generate the UAS-GluRIIBIIAtail transgenes, the 5′ fragments of GluRIIB (1–2511 bp) and the 3’ fragment of GluRIIA (2510–2724 bp) were cloned from the cDNAs of GluRIIB and GluRIIA65 (link). The GluRIIBIIAtail fragment was then generated by overlap extension PCR from the GluRIIB 5′ fragment and the GluRIIA 3′ fragment. The GluRIIBIIAtail fragment was then inserted into the pUAST vector66 (link). The transgenic stock of UAS-GluRIIBIIAtail was generated by Eppendorf InjectMan (Hamburg, Germany) and inserted into the w1118 strain.
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7

Drosophila RNA Interference Assay

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Thirty virus-infected adult female flies per experiment were injected into the thorax with 30 nL of dsRNA (3 mg/mL) using a glass needle (Sutter instrument Co.) coupled to a nanoinjector (InjectMan; Eppendorf, Hamburg, Germany). Three days later, the whole bodies of flies were processed for total RNA extraction according to previous studies [29 (link)]. The obtained RNA was reverse-transcribed, and the cDNA was used for the analysis of gene expression using RT-qPCR as previously described.
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8

Precise Cell Seeding on Functionalized Surfaces

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EPC surfaces were functionalized with fibronectin (FN) (20 µg/mL in PBS). For precise seeding of cells into the pillar rings, borosilicate microcapillaries (outside diameter: 1.0 mm, inside diameter: 0.72 mm, Hilgenberg, Malsfeld, Germany) were used. The front end of the capillary was forged to an outer diameter of 15 µm using a capillary puller (Sutter Instrument, Novato, CA, USA) and bent to an angle of 45° using a homemade microforge. Cells were detached from cell culture flasks with trypsin/EDTA (0.05%), resuspended in growth media, and loaded into the capillary (5 × 105 cells/mL). Cell injection was performed by using a micromanipulator (Inject Man) and an oil-driven microinjector (CellTram vario) (both Eppendorf, Wesseling, Germany).
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9

Quantifying Gap Junction Permeability

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Gap junctional communication was assayed by microinjecting Lucifer Yellow (MW 443 Da; Lithium salt), Alexa Fluor 488 (MW 570 Da; A-10436), and Alexa Fluor 594 (MW 760 Da; A-10438) using Eppendorf InjectMan and FemtoJet microinjection systems (models 5271 and 5242, Brinkmann Instrument, Inc. Westbury, NY) mounted on Leica DMIRE2 microscope. After capturing the images of microinjected cells with the aid of CCD camera (Retiga 2000R, FAST 1394) using QCapture (British Columbia, Canada), the permeability of various fluorescent tracers was quantitated by scoring the number of fluorescent cells at 1 min (Lucifer Yellow), 3 min (Alexa 488) and 15 min (Alexa 594) after microinjection into test cell as described [22] , [25] (link), [43] (link), [48] (link).
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10

Zebrafish Xenotransplantation Model for Cancer

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Zebrafish embryos of the pigment-free casper strain (roy−/−; mitfa−/−) were used in the experiments. One 10-cm plate of MCF10 DCIS.COM cells stably expressing LifeAct mRFP were trypsinized, washed twice in PBS, and resuspended in 30 µl of 2% polyvinylpyrrolidone (Sigma-Aldrich) diluted in PBS for injection. Before injections, 24 hpf embryos were dechorionated, anesthetized (160 mg/l tricaine; Sigma-Aldrich), and immobilized with 0.7% low-melting point agarose (Sigma-Aldrich). Tumor cells were microinjected as a suspension of single cells, using glass microinjection capillaries (TransferTip; Eppendorf), into the pericardial cavity of 24-hpf zebrafish embryos using Celltram vario microinjector (Eppendorf) and Injectman (Eppendorf) micromanipulator mounted on a SteroLumar V12 stereomicroscope (Zeiss). After injection, the embryos were released from the agarose with forceps, washed with E3 medium, and cultured at 34°C in E3 medium. For imaging, the embryos were anesthetized and mounted in low-melting point agarose on glass-bottom dishes.
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