The LightCycler PCR platform is a real-time PCR system designed for nucleic acid amplification and detection. It offers precise temperature control and optical system for accurate quantification of target sequences.
Total RNA was prepared from the NAc, CPu, BLA, and hypothalamus (Hypo) by using an RNeasy mini kit (Qiagen) or TRIzol reagent (Invitrogen). First-strand cDNA synthesis was performed by using a ReverTra Ace qPCR RT Master Mix with gDNA Remover (Toyobo). Total RNA (250 ng) was subjected to quantitative real-time PCR performed with a SYBR Fast qPCR Kit (KAPA Biosystems, Wilmington, MA, USA) on a Light Cycler PCR platform (Roche Diagnostics, Basel, Switzerland). Primers used for qPCR are listed in Table 1. PCR was performed by using the following protocol: 95 °C for 3 min, followed by 45 cycles in total at 95 °C for 10 s and 60 °C for 30 s, then 72 °C for 1 s. Generation of specific PCR products was confirmed by melting curve analysis and DNA gel electrophoresis. Data were analyzed by using the ΔΔCt method, with normalization against GAPDH mRNA expression.
Primers used in the present study.
Table 1
Genes (Genbank Accession number)
Primers
Product length (bp)
NMU (NM_019515.1)
Forward
5′-GTCCTCTGTTGTGCATCCGTT-3′
130
Reverse
5′-GCGTGGCCTGAATAAAAAGTA-3′
NMUR1 (NM_010341.1)
Forward
5′-CGTCATCCTGCGCAACAAG-3′
223
Reverse
5′-CACACTCAGGGCTGTGACAT-3′
NMUR2 (NM_153079.4)
Forward
5′-TGTCACCACGGTTAGCATTGA-3′
218
Reverse
5′-GTTTGGTGACTGTGCAGGTG-3′
GAPDH (NM_008084.2)
Forward
5′-CGTCCCGTAGACAAAATGGT-3′
177
Reverse
5′-GAATTTGCCGTGAGTGGAGT-3′
Anan M., Higa R., Shikano K., Shide M., Soda A., Carrasco Apolinario M.E., Mori K., Shin T., Miyazato M., Mimata H., Hikida T., Hanada T., Nakao K., Kangawa K, & Hanada R. (2020). Cocaine has some effect on neuromedin U expressing neurons related to the brain reward system. Heliyon, 6(5), e03947.
Blood was collected in EDTA-containing tubes from well-ascertained MCI and ADD patients and healthy participants recruited from the southern part of Greece. After collection, these samples were centrifuged within 4 h to obtain a buffy coat of white cells. The genomic DNA was extracted from 200 μL of buffy coat using the High Pure PCR Template Kit (Roche, Penzberg, Germany). For the amplification of the APOE gene, 30 ng of genomic DNA was amplified using a real-time qPCR kit (TIB MolBiol, Berlin, Germany) in the Light Cycler PCR platform (Roche) [47 (link)]. Ambiguous or positive samples for the APOE4 allele were confirmed by conventional PCR followed by HhaI restriction digestion and analysis in ethidium bromide-stained 4% high-resolution agarose gels [48 (link)].
Papastefanopoulou V., Stanitsa E., Koros C., Simoudis A., Florou-Hatziyiannidou C., Beratis I., Antonelou R., Andronas N., Voskou P., Angelopoulou E., Papatriantafyllou J.D., Stefanis L., Kroupis C, & Papageorgiou S.G. (2022). APOE Allele Frequency in Southern Greece: Exploring the Role of Geographical Gradient in the Greek Population. Geriatrics, 8(1), 1.
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