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3 protocols using novex nupage 4 12 bis tris protein gels

1

Protein Extraction and Western Blot Analysis

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Brain regions (OE, OB, cerebral cortex, cerebellum) were homogenized by a motor-driven pestle on ice in 1× RIPA buffer (Millipore) supplemented with 1 mM phenylmethane sulfonyl fluoride (PMSF), 1 mM Na3VO2, 10 mM NaF, phosphatase inhibitor cocktails (Sigma), and Roche Complete Mini EDTA-free Protease Inhibitor Cocktail Tablet (Roche). Homogenates were centrifuged at 10,000 × g for 10 min at 4°C; the supernatants were analyzed by performing Western blotting using 20 μg of total protein on Novex NuPAGE 4–12% Bis-Tris protein gels (Thermo Scientific). Membranes were washed with PBS with 0.05% Tween-20 (PBST), then blocked with 5% milk/PBST or 5% BSA/PBST for 1 hr at 21–23°C, followed by overnight incubation with primary antibodies at 4°C: anti-TNFα (1:250, mouse; R&D Systems), anti-3-nitrotyrosine (1:1,000, rabbit; Millipore), anti-4-hydroxynonenal (1:250, mouse; R&D Systems), anti-olfactory marker protein (OMP) (1:400, goat; Santa Cruz), anti-cleaved caspase 3 (1:1,000, rabbit; Cell Signaling), anti-caspase 3 (1:1,000, rabbit; Cell Signaling), anti-actin (1:10,000, mouse; Sigma). Horseradish peroxidase (HRP; 1:10,000, goat; Jackson)-enhanced chemiluminescence was detected using West Pico Chemiluminescent Substrate (Thermo Scientific). The density of the bands was assessed using ImageJ (Abràmoff et al. 2004 ).
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2

Quantification of Hippocampal Synaptic Proteins

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Dorsal hippocampus of the contralateral hemisphere was microdissected and homogenized by a motor driven pestle on ice in 1× RIPA buffer (Millipore) supplemented with 1 mM PMSF, 1mM Na3VO2, 10 mM NaF, phosphatase inhibitor cocktail (Sigma), and Roche Complete Mini EDTA-free protease Inhibitor Cocktail Tablet (Roche). Homogenates were centrifuged 10,000 g × 10 min, and supernatants were analyzed by Western blot on Novex NuPAGE 4–12% Bis-Tris protein gels (Thermo Scientific). Membranes were washed with phosphate buffered saline with 0.05% tween-20, and blocked with 5% BSA for 1 hour at room temperature. Primary incubation was overnight at 4°C for glutamatergic receptor protein subunits GluA1 (Abcam), GluA2 (Millipore), NR2A (Millipore), NR2B (Millipore), and other synaptic proteins (Sigma) at 1:1,000 overnight, and followed by secondary antibodies (1:10,000) conjugated with IRDye 800 (mouse, LI-COR Biosciences) or IRDye 680 (rabbit, LI-COR Biosciences) for 1 hour. Protein bands were quantified by Qdyssey V3.0 software (LI-COR Biosciences).
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3

Immunoblotting of Alzheimer's Biomarkers

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Samples of 20 μg protein were loaded on Novex NuPAGE 4-12% Bis-Tris protein gels (Thermo Scientific, Carlsbad, CA). Membranes were washed with PBS with 0.05% Tween-20 (PBST), then blocked with 5% milk/PBST or 5% BSA/PBST/1 h; incubated with primary antibodies\4°C: anti-amyloid precursor protein, APP (6E10, full length, APP, 1:1000, mouse; Covance); anti-BACE1 (β-secretase, 1:1000, rabbit; clone D10E5, Cell Signaling); anti-PS1 (presenilin 1, 1:1000, mouse, clone D39D1, Cell Signaling); anti-actin (1:10000, mouse, Sigma). Membranes were washed and incubated with HRP-conjugated secondary antibody (1:10000, Jackson ImmunoResearch). Chemiluminescence was detected by West Pico Chemiluminescent Substrate (Thermo Scientific).
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