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21 protocols using donkey anti rabbit igg h l alexa fluor 488

1

Investigating Lipid Metabolism Regulation

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L-theanine (CAS: 3081-61-6, 98% purity) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Donkey anti-Rabbit IgG H&L (Alexa Fluor 488) (#ab150075; 1:500) was obtained from Abcam (Cambridge, UK). DAPI was purchased from Invitrogen (Carlsbad, CA, USA). STO-609, BAPTA-AM were purchased from Topscience (Shanghai, China).
Primary antibodies against ACC1 (#3676), FASN (#3180), p-AMPK (#2535), AMPKα (#5831) were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibody against p-CaMKKβ (#AF4487), CaMKKβ (#DF4793) were purchased from Affinity Biosciences (OH, USA). Antibody against SREBP-1c (#A15586), phospho-mTOR (#AP0094), mTOR (#A2445), HRP Goat Anti-Rabbit IgG (#AS014), and HRP Goat Anti-Mouse IgG (#AS003) were purchased from ABclonal (Wuhan, Hubei, China). Antibodies against PPARα (#15540-1-AP), CPT1A (#15184-1-AP), SREBP-1c (#14088-1-AP) were purchased from Proteintech (Chicago, IL, USA). Antibodies recognizing GAPDH (#AP0063), Lamin B (#AP6001), and β-ACTIN (#AP0060;) were purchased from Bioworld Technology (Minneapolis, MN, USA). Donkey anti-Rabbit IgG H&L (Alexa Fluor 488) (#ab150075) was obtained from Abcam (Cambridge, UK). DAPI was purchased from Invitrogen (Carlsbad, CA, USA).
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2

Immunohistochemical Analysis of Reelin and DAB1

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Kidney tissues were dissected and fixed in 4% paraformaldehyde in phosphate buffer and dehydrated in 100% ethanol. They were embedded in paraffin wax, serially sectioned at 5 μm, and mounted on glass slides. The sections were deparaffinized in xylene and rehydrated in ethanol and water as we described previously (21 (link)-23 (link)). After washing in phosphate-buffered saline (PBS), the sections were incubated in humid chamber over night with primary antibodies: Mouse Monoclonal Reelin antibody (1:70 dilutions; sc-25346, Santa Cruz Biotechnology, Dallas, TX, USA), Rabbit Polyclonal Anti-DAB1 (phospho Y232) antibody (1:400 dilutions; ab 78200, Abcam, Cambridge, UK). After washing in PBS, secondary antibodies, Donkey Anti-Rabbit IgG H&L, Alexa Fluor 488 (dilution 1:400, ab 150073, Abcam) and Goat Anti-Mouse IgG H&L, TRITC (dilution 1:400, ab 6786, Abcam) were applied for one hour. The nuclei were stained with DAPI for 2 minutes, washed in PBS, and coverslipped. Controls for specificity of staining, with omission of the primary antibody, were included in the staining procedure to exclude nonspecific staining.
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3

Hyaluronic Acid-Based Theranostic Nanoparticles

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Sodium hyaluronate (0.48 MDa) was purchased from Bioland, Korea. 5ß-cholanic acid (CA), Formamide and Pyrene was purchased from Sigma Aldrich, USA. Fluorescent probe FlammaFCI-774 (F774) and FlammaFCR-552 (F552) were obtained from BioActs, Korea. 1-Ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC), N-hydroxysuccinimide (NHS) and dicyclohexylcarbodiimide (DCC) were purchased from Sigma Aldrich, USA. N-N dimethyl formamide was purchased from Merck, Germany. 3-(4, 5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium) (MTS) was purchased from Promega, USA. Losartan potassium(Sigma Aldrich, USA), Angiotensin 2 human Sigma Aldrich, USA), Anti alpha smooth muscle actin antibody (abcam,Cambridge,UK),Donkey Anti-Rabbit IgG H&L (Alexa Fluor® 488) (abcam,Cambridge,UK), Goat anti-rabbit IgG (HRP) (abcam,Cambridge,UK), DAB chromogen (Dako, Agilent Technologies, Denmark). FL83B cell line was purchased from ATCC (Manassas,USA) and hHSC from ScienCell Research Laboratories (CA,USA). Hydroxyproline Assay kit (Chondrex,WA,USA). RPMI-1640 and Dulbecco’s modified Eagle’s medium (DMEM) were purchased from Thermo Scientific, USA. All other reagents were of analytical or chromatographic grade.
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4

Immunofluorescent Characterization of Cells

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Fresh cells were seeded at a suitable density on microscope slides, washed three
times with PBS, fixed with 4% paraformaldehyde for 20 min, and permeabilized by
treating with 0.5% Triton X-100 for another 10 min. The cells were blocked by
treating with 3% bovine serum albumin (BBI, Shanghai, China) for 1 h. Rat
anti-vimentin (1:100; Cell Signaling Technologies, Danvers, MA, USA) and rabbit
anti-CD34 (1:200; Abcam, Cambridge, UK) antibodies were used. The cells were
treated with the antibodies overnight at 4°C. After washing three times with
PBS, the cells were treated with donkey anti-rabbit IgG (H+L) Alexa Fluor 488
(1:1000; Abcam, Cambridge, UK) or goat anti-mouse IgG (H+L) Alexa Fluor 568
(1:1000; Abcam, Cambridge, UK) at 37°C for 1 h, followed by treatment with
4’,6-diamidino-2-phenylindole (DAPI; Cayman Chemical, Ann Arbor, MI, USA). The
slides were fixed in an antifade medium (1:1000; Beyotime, Shanghai, China) and
imaged using an inverted fluorescent microscope (Nikon, Tokyo, Japan).
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5

Comprehensive Immunostaining and Western Blot Protocol

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HA-Tag Rabbit mAb; CST; 3724; Clone C29F4; Lot 8; IF/WB; 1:1500/1:1000
Calnexin Antibody (H-70); SCBT; sc-11397; WB; 1:10,000
Mouse anti-α-Tubulin antibody; Sigma-Aldrich; T6074; Clone B-5-1-2; WB; 1:10,000
Donkey Anti-Rabbit IgG H&L Alexa Fluor® 488; Abcam; ab150073; IF; 1:1000
Anti-rabbit IgG, HRP-linked Antibody; CST; 7074; Lot 28; WB; 1:6000
Anti-mouse IgG, HRP-linked Antibody; CST; 7076; Lot 33; Dot blot; 1:4000
Phalloidin-Tetramethylrhodamine B isothiocyanate; Sigma Aldrich; P1951; IF; 50 μg/mL.
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6

Immunofluorescence Staining of MDSCs, FFCs, and EFCs

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The 5th-passage MDSCs, FFCs, and EFCs (1 × 104 cells/well) were cultured onto coverslips and fixed with 4% paraformaldehyde for 30 min. Fixed cells were permeabilized with 0.1% Triton X-100 for 15 min on ice. Then, cells were blocked in 5% bovine serum album for 1h at 37 °C and incubated with primary antibodies overnight at 4 °C. This was followed by incubation with secondary antibodies (Donkey Anti-Rabbit IgG H+L (Alexa Fluor® 488) (Abcam, Carlsbad, CA, USA) for 1h in the dark. The cells were incubated with DAPI for 20 min to stain nuclei, and cell immunofluorescence images were acquired using a Nikon microscope (Nikon-Air, Nikon instruments Co., LTD, Tokyo, Japan). Negative controls were incubated with PBS instead of the primary antibody. See Supplementary Table S1 for a list of the primary antibodies used.
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7

Immunofluorescence Imaging of Autophagy Proteins

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661w cells were grown on confocal plates and fixed and permeabilized with methanol for 15 min at −20 °C, followed by three washes with PBS. Then the cells were incubated for 1 h in blocking buffer (5% normal goat or donkey serum, 0.3% Triton X-100 in PBS), following by incubation with anti-LC3B primary antibody (1:400, Cell Signaling Technology, MA, USA, Cat#83506), anti-TOM20 primary antibody (1:200, Cell Signaling Technology, Cat#42406), anti-PINK1 primary antibody (1:200, Abcam, Cambridge, UK, Cat#ab23707) and anti-Parkin primary antibody (1:200, Abcam, Cat#ab77924) overnight at 4 °C. After gently washing, the respective fluorescent secondary antibodies purchased from Abcam (Goat Anti-Mouse IgG H&L, Alexa Fluor 488, Cat#ab150113, 1:1000; Goat Anti-Rabbit IgG H&L, Alexa Fluor 647, Cat#ab150079, 1:1000; Donkey Anti-Mouse IgG H&L, Alexa Fluor 594, Cat#ab150108, 1:1000; Donkey Anti-Rabbit IgG H&L, Alexa Fluor 488, Cat#ab150073, 1:1000) were added and the cells were incubated at 37 °C for 2 h in the dark. Nuclei were stained with 0.01 mg/ml Hoechst 33342. The cells were photographed using a laser-scanning confocal microscope (Leica, Nussloch, Germany) for fluorescence and a digital camera driven by LAS AF software.
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8

Immunofluorescence Analysis of Phospho-Histone H3

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After treatment, HUVECs were fixed with 4% paraformaldehyde. Cells were then incubated with phospho‐Histone H3‐S10 antibody (Cat#: AP0840, ABclonal Technology, Wuhan, China) overnight at 4°C. Cells were then washed with phosphate‐buffered saline (PBS) three times. Then, cells were incubated with the secondary antibodies Donkey Anti‐Rabbit IgG H&L (Alexa Fluor® 488) (Cat#: ab150065, Abcam, USA) or Goat anti‐rabbit IgG (H + L) Highly Cross‐Adsorbed Secondary Antibody, Alexa Fluor™ 546 (Cat#: A‐11035, Invitrogen, USA). After being washed three times, cells were mounted with an antifading Mounting Medium with DAPI (Cat#: S2110, Solarbio, Beijing, China). Phospho‐Histone H3‐positive cells were captured with a Leica TCS SP5 II confocal microscope (Leica, Germany), and Phospho‐Histone H3‐positive cells were counted by Image J (NIH, USA).
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9

Immunofluorescence Analysis of Bone Markers

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Double immunofluorescent staining was performed using the following primary antibodies: mouse anti-NF-κB p65 (dilution ratio: 1:150; Santa Cruz Biotechnology, Dallas, TX, USA), rabbit anti-CTSK (1:150; Abcam), rabbit anti-RANKL (1:150; Proteintech Group Inc., Rosemont, IL, USA), rabbit anti-OPG (1:150; Abcam), rabbit anti-OPN (1:200; Abcam), and rabbit anti-OCN (1:200; Abcam). The sections were first blocked using 5% bovine serum albumin and were then incubated with a specific primary antibody, followed by species-matched secondary antibodies (Donkey Anti-Rabbit IgG H&L Alexa Fluor 594 and Donkey Anti-Rabbit IgG H&L Alexa Fluor 488; Abcam), at a 1:200 dilution. All tissue sections were subjected to autofluorescence quenching (Vector TrueVIEW; Vector Laboratories, Inc.) and mounted with VECTASHIELD Vibrance Antifade Mounting Medium with DAPI (Vector Laboratories, Inc.) following the manufacturer’s protocol. Fluorescent images were acquired using a Leica TCS-SP8 confocal laser scanning microscope (Leica Biosystems, Wetzlar, Germany) within 48 h after mounting. The immunofluorescence expression of each sample was evaluated using the MFI; a.u.).
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10

Multiparametric Flow Cytometric Analysis of β2-Adrenergic Receptor

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Human cells were resuspended in a staining buffer (PBS + 0.1% bovine serum albumin +0.1% sodium azide) and treated with human FcR blocking agent (Miltenyi Biotec, cat. no. 130–059-901) for 10 min at 4°C prior to staining. Samples were stained with primary Anti-beta2-adrenergic receptor Ab (Abcam, cat. no. ab61778) for 30 min at 4°C. After three washing steps with a staining buffer, Donkey anti-rabbit IgG H + L (AlexaFluor488) (Abcam, cat. no. ab150073) was added, together with the viability stain 7-AAD (BioLegend, cat. no. 420404) and the remaining conjugated antibodies [CD19 PE (BioLegend, cat. no. 363004), CD14 PE-Vio770 (Miltenyi Biotec, cat. no. 130–098-074) and CD3 APC (BioLegend, cat. no. 3004399)] for 20 min 4°C protected from light. Samples were washed three times prior to analysis on a flow cytometer. Along with the samples, appropriate controls were prepared, including unstained control and compensation controls using BD™ CompBeads Anti-Mouse Ig, κ/Negative Control (BD Bioscience, cat. no. 552843). Secondary only controls were prepared by omitting the primary Anti-beta2-adrenergic receptor Ab staining step. The analysis of the stained samples was done using a BD FACSCantoTM II flow cytometer and computer equipped with the BD FACSDivaTM software (BD Biosciences, version 6.1.3). Data was analysed by the FlowJo software (version 10.6.1).
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