The largest database of trusted experimental protocols

Isogen kit

Manufactured by Nippon Gene
Sourced in Japan

The ISOGEN kit is a laboratory product designed for the isolation and purification of RNA from various biological samples. It utilizes a proprietary reagent formulation to facilitate the efficient extraction of RNA while maintaining its integrity.

Automatically generated - may contain errors

72 protocols using isogen kit

1

Quantitative Real-Time PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using ISOGEN kits (Nippon Gene, Tokyo, Japan). cDNA synthesis and qRT-PCR were performed as previously described [45 (link)]. Briefly, 300 ng of total RNA was reverse transcribed using random hexamers (Takara Bio) and Moloney murine leukemia virus reverse-transcriptase (Thermo Fisher Scientific). Of each cDNA, 10 ng was added to the SYBR Green Realtime PCR Master Mix (Toyobo, Osaka, Japan) or LightCycler 480 SYBR Green I Master (Roche, Basel, Switzerland) with 1 µM of each primer (see Table S1). Real-time fluorescence monitoring was performed using LightCycler 2.0 or LightCycler 480 II (Roche). Values were normalized to 18S rRNA, expressed relative to controls (treated empty vector (pSG5), small interfering RNA (siRNA) targeting green fluorescent protein (siGFP), or vehicle). The BMAL1 gene, a known RORα target, was used as a positive control.
+ Open protocol
+ Expand
2

Renal Cortex SPP1 mRNA Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Thirty-six-week-old rats were sacrificed, and total RNA in the renal cortex was extracted
with ISOGEN kits (Nippon Gene, Tokyo, Japan). The RNA was treated with DNase I (QIAGEN,
Venlo, Netherlands). Then first-strand cDNA was synthesized using a PrimeScript RT reagent
Kit (Takara Bio, Otsu, Japan). We carried out real-time quantitative RT-PCR for the mRNA
expression of secreted phosphoprotein1 (Spp1) in the renal cortex by
using a 7900HT Fast Real-Time PCR System with commercial TaqMan probe kits (TaqMan Gene
Expression Assays, (Life Technologies) and TaqMan Universal PCR Master Mix (Life
Technologies) according to a standard method. Actb was used as a housekeeping reference
gene.
+ Open protocol
+ Expand
3

Goldfish Tissue RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
First, samples of Brockmann body, brain, liver, and muscle tissues were collected from goldfish during the daytime. Total RNA was then isolated from these tissues using an ISOGEN kit (Nippon Gene, Tokyo, Japan); all procedures were performed as per the manufacturer’s instructions. Next, 1 µg of total RNA was reverse-transcribed to cDNA using PrimeScript Reverse Transcriptase and oligo dT primers (Takara Bio, Shiga, Japan).
+ Open protocol
+ Expand
4

Cell Culture and Viability Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Vs, Hs and Vn were purchased from Sigma Aldrich, USA. Dulbecco’s Modified Eagle Medium (DMEM)/F-12 and Opti-MEM were obtained from Gibco, USA. Fetal bovine serum was from Gibco, South America. Penicillin - Streptomycin were purchased from Biowhittaker, USA. Non-essential amino acids were from Cosmo Bio Co, LTD, Japan. MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) and dexamethasone were from Dojindo, Japan. Bupropion was from Wako, Japan. ATP bioluminescence kit was from TOYO Ink, Japan. ISOGEN kit was purchased from Nippon Gene, Japan. RIPA lysis buffer was from (Santa Cruz Biotechnology, USA). 2-D Quant was purchased from GE Healthcare Life Sciences, USA. Calcium Kit II-Fluo 4 was from Dojindo, Japan.
+ Open protocol
+ Expand
5

Adipose Tissue Isolation and Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adipose tissue was collected and incubated with 0.5% collagenase A (Roche, Mannheim, Germany) for 1 h at 37 °C. The digested adipose tissue was filtered through a 70‐μm strainer and centrifuged at 300 g for 4 min at 4 °C. The cell pellet was collected and washed with phosphate‐buffered saline. Total RNA was collected using an Isogen kit (Nippon gene, 311‐02501). cDNA was synthesized using a QuantiTect Reverse Transcription Kit (Qiagen Valencia, CA, USA). The mRNA levels of Mafb, AIM, and Mac‐1 were measured using SYBR green PCR master mix (Takara Bio, Otsu, Japan). The mRNA levels of Mafb and AIM were normalized to the Mac‐1 mRNA level. The following primer sequences were used: Mafb forward, 5′‐TGAATTTGCTGGCACTGCTG‐3′; Mafb reverse, 5′‐AAGCACCATGCGGTTCATACA‐3′;AIM forward, 5′‐GTACCACGACTGTACCCACAAGGA‐3′;AIM reverse, 5′‐GAATGAGGGCCCACTGAACAA‐3′; Mac‐1forward, 5′‐ATGGACGCTGATGGCAATACC‐3′; Mac‐1 reverse, 5′‐ TCCCCATTCACGTCTCCCA‐3′;
+ Open protocol
+ Expand
6

Genomic DNA Extraction from Frozen Insect

Check if the same lab product or an alternative is used in the 5 most similar protocols
Female individuals in short or long strains were frozen by liquid nitrogen. Head and thoracic tissues without legs were removed from the frozen bodies by a pair of fine spring scissors. Each tissue was homogenized by the scissors and an electric homogenizer (T10 + S10N-5G, IKA Works, Staufen, Germany) in an extraction buffer from an ISOGEN kit (Nippongene, Tokyo, Japan) according to the manufacturer’s instructions. The quality and quantity of the extracted DNA were determined at 230, 260, and 280 nm using a spectrophotometer (NanodropTM 2000, Thermo Fisher Scientific, MA, USA).
+ Open protocol
+ Expand
7

Transcriptome Analysis of Insect Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Frozen brains were dissected in ice-cold double-sterilized 0.1 M phosphate buffer (pH 7.0) on a Peltier cooling unit at approximately 4 °C covered with plastic paraffin film (Parafilm, Bemis Company, Chicago, IL, USA) under a dissecting microscope. Dissected brains, including the subesophageal ganglion, were homogenized with an electric homogenizer (T10 + S10N-5G, IKA Works, Staufen, Germany) in extraction buffer from an ISOGEN kit (NipponGene, Tokyo, Japan). Total RNA was extracted from two brains using an RNA isolation kit according to the manufacturer’s instructions. During RNA extraction, the RNA was treated with rDNase (RT Grade for Heat Stop, Nippongene) for 15 min to remove genomic DNA and then mixed with stop solution at 70 °C for 10 min. The quality and quantity of extracted RNA were determined at 230, 260, and 280 nm using a microvolume spectrophotometer (Nanodrop 2000, Thermo-Fisher Scientific, Waltham, MA, USA). Five RNA samples of queens and workers (two samples from each of two colonies and one sample from one colony) were examined.
+ Open protocol
+ Expand
8

Quantifying Hepatic and Intestinal Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hepatic and intestinal mRNA expression was determined using real-time polymerase chain reaction (PCR). Total RNA was extracted using the acid-guanidinium-phenol chloroform method (Isogen kit; Nippon Gene, Tokyo, Japan). Extracted RNA was stored at −80 °C until use in real-time PCR. For the latter, 1 μg of RNA was reverse-transcribed to first-strand complementary DNA (cDNA) using a high capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, United States). Real-time PCR was carried out on a 7300 real-time PCR system (Applied Biosystems, Foster City, CA, United States) using the DNA-binding dye SYBR Green to detect the PCR products with the primers shown in Table 2. Gene expression was normalized to that of b-actin as an internal control.
+ Open protocol
+ Expand
9

RNA Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
According to the manufacturer’s guide, the RNA was extracted using the Isogen kit (Nippon Gene Co. Ltd., Tokyo, Japan). Then, RNA quantity and quality were determined using the NanoDrop 2000 spectrophotometer (ThermoScientific, Waltham, MA, USA).
+ Open protocol
+ Expand
10

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated with a phenol-chloroform extraction method using ISOGEN kit (Nippon Gene Co., Ltd.) according to the manufacturer’s protocol, and reverse transcribed using QuantiTect® Reverse Transcription Kit (QIAGEN). cDNA from 1 µg of total RNA was subjected to real-time PCR. TaqMan Gene Expression Master Mix (Life Technologies Co., Ltd.) was used for real-time quantitative PCR. The primer sets were obtained from Applied Biosystems (Fgf23, no. Mm00445621_m1; Actb, no. Mm02619580_g1). Reactions were run on and analyzed with a QuantStudio™ 5 real-time PCR system (Thermo Fisher Scientific K.K.). Fgf23 mRNA expression levels were normalized with respect to those of Actb mRNA.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!