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41 protocols using fluoromount g mounting media

1

Lung Tissue Fixation and Cryosectioning

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Lungs were excised and submerged in BD Cytofix diluted 1:3 with PBS for 24hr at 4°C. Lungs were washed twice in PBS and dehydrated in 30% sucrose for 24 hours prior to embedding in OCT and rapid freezing in a 2-methylbutane and dry ice slurry. A cryostat was used to generate 20μm sections, which were stained overnight with fluorescently conjugated antibodies at room temperature and cover-slipped with Fluoromount G mounting media (SouthernBiotech). Images were acquired on a Leica SP8X confocal microscope.
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2

Immunofluorescence Staining Protocol

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Samples were permeabilized and blocked using 5% normal goat serum/Triton X-100 (NGST) applied directly over the microscope slide for one hour. 5% NGST was made in PBS containing 0.3% Triton X-100 and 5% normal goat serum and/or 5% normal donkey serum (Sigma-Aldrich, Saint Louis, MO, USA). After permeabilization, samples were incubated with primary antibody overnight in 1% NGST, then washed three times in fresh PBS (5 min/wash). After 1 hr incubation with the secondary antibody in 1% NGST, the slides were washed again five times (10 min/wash), and extrafine coverslips (Fisherfinest, Premium Cover Glass, Fisher Scientific) were mounted using Fluoromount G mounting media (SouthernBiotech, Birmingham, AL, USA). Samples were visualized using an Eclipse Ti confocal microscope (Nikon).
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3

Immunofluorescence Imaging of DNA Damage

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Slides were fixed and blocked with 1% BSA and 1X PBS for 1 h in a humidified chamber at room temperature, then incubated overnight with γH2AX and P-RAD50 primary antibodies and washed with 1X PBS. Next slides were incubated with secondary antibodies AlexaFluor 488 and AlexaFluor 555 (Life Technologies) for 1 h in a humidified chamber at room temperature and washed in PBS. Counterstaining with DAPI in 1X PBS was performed for 30 min, followed by additional PBS wash. Slides were mounted with Fluoromount-G mounting media (SouthernBiotech), and imaged using Olympus FV-1000 confocal microscope at 20X magnification as described previously [22 (link)].
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4

Immunofluorescent detection of cell-cell fusion

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The 293T-GFP110 and 293T-GFP11 cells were seeded in Lab-Tek chamber slides and transfected with STsyn1 constructs as described in Section ‘Cell–cell fusion assay (293T cells)’. Twenty-four hours later the cells were fixed in 4% paraformaldehyde in PBS for 15 min. Free aldehydes were blocked by incubation with 40 mM NH4Cl in PBS for 5 min. Nonspecific binding was blocked with 1% FBS in PBS containing 0.02% sodium azide for 10 min, followed by 1 h, RT incubation with the StrepMAB-Immo antibody (IBA Lifesciences, Cat. No. 2-1517-001) diluted 3000 times in blocking buffer. After 3 washes in PBS, the secondary antibody, goat antibody against the mouse IgG conjugated with Alexa Fluor 555 (Invitrogen, #A28180), diluted 1:2000 was added and incubated for 1 h. Nuclei were stained with Hoechst stain (Invitrogen) at 1 μg/mL in PBS for 5 min before mounting the coverslips onto 76 × 26 mm slides (Thermofisher) using Fluoromount-G mounting media (Southern Biotech). Images were taken with a Leica DM LB microscope and analyzed with ImageJ software.
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5

Fluorescent Visualization of Inner Ear Sensory Epithelia

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We washed saccule, utricle, and lagena sensory epithelia twice with 0.1M phosphate buffered saline (PBS) and incubated them for 1 hour with phalloidin conjugated to rhodamine (Thermo Fisher Scientific Invitrogen, cat. no. R415) diluted 1:40 in 0.1 M PBS. We washed epithelia again with 0.1 M PBS and then placed them on coverslips (oriented with apical sides against the coverslip) and whole mounted them in Fluoromount-G mounting media (Southern Biotech, cat. no. 0100–01) onto slides. We sealed slides with nail polish and stored them at +4° C in the dark until fluorescence imaging.
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6

Cryosectioning and Immunostaining of Lymph Nodes

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All thin tissue sections were fixed with Cytofix (BD Biosciences) buffer diluted 1:3 with PBS for 12h at 4C and then dehydrated with 30% sucrose in PBS for 12–24h at 4C. Tissues were next embedded in O.C.T. compound (Tissue-Tek) and stored at 80C. LNs were sectioned on a Thermo Scientific Microm HM550 cryostat into 20 mm sections and were then prepared and imaged as previously described (Gerner et al., 2012 (link)). Briefly, sections were stained with panels of fluorescently conjugated antibodies, shown in Table S1, coverslipped with Fluoromount G mounting media (SouthernBiotech), and imaged on a Leica SP8 microscope. Antibody panels were designed to detect various innate and adaptive immune populations. In some analyses, limitations to the maximum number of analytes per panel precluded the discrimination of certain populations, such as migratory cDC1 and Langerhans cells. Certain discriminatory markers typically used in flow cytometry, such as cDC1-associated CD103 and XCR1, are not easily usable for confocal imaging due to epitope loss after paraformaldehyde fixation.
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7

Quantifying Platelet Spreading on Fibrinogen

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After treatments, platelets were spread on fibrinogen-coated coverslips as a surrogate measure of wound healing, as previously described [32 (link)]. Coverslips were coated with 50 μL of 250 μg/mL fibrinogen (Sigma-Aldrich, St Louis, MO) for 2 hours at room temperature, then blocked with 0.5% bovine serum albumin (BSA; Sigma-Aldrich, St Louis, MO) in 1 X phosphate buffered saline (PBS) for up to 1.5 hours. Washed human platelets were diluted to 3.3 × 107 platelets/mL in TSS and 300 μL plated onto the fibrinogen coated coverslips, then incubated at 37°C for 45 minutes to spread. The coverslips were then washed with PBS three times, and fixed with 4% paraformaldehyde in PBS for 15 minutes. After fixing, coverslips were washed once with PBS, then mounted onto slides using Fluoromount G mounting media (Southern Biotech). Images were taken at 100X with an Olympus BX51 microscope (Olympus, Melville, NY) using differential interference contrast microscopy (DIC), and at least 5 fields of view were captured for each coverslip. Images were edited using SPOT software to enhance platelet visibility. Platelet spreading was quantified by manual counting, after blinding via randomizing images and obscuring sample information.
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8

Cardiac Fibrosis and Structure Analysis

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Subgroups of hearts were harvested at 4 and 14 weeks after TAC for analyses of structure, fibrosis, and biochemistry. Trichrome staining was performed as previously described (44 (link)). Briefly, mice were euthanized, and after cardioperfusion, hearts were fixed for 1 to 3 days in 4% paraformaldehyde at 4°C. Hearts were dehydrated and paraffinized using the Microm STP 120 from Thermo Fisher Scientific, embedded in paraffin using a HistoStar apparatus (Thermo Fisher), and sectioned (4 to 6 μm) using the Microm HM 325 (Thermo Fisher). Tissue sections were then stained with Weigert’s iron hematoxylin and Masson trichrome (Sigma-Aldrich) according to the manufacturer’s instructions. Interstitial fibrosis was quantified by color threshold measures using ImageJ. Alternatively, tissue sections were deparaffinized and rehydrated according to the trichrome staining protocol, but after the wash with deionized water, heart sections were washed three times for 5 min with 1× phosphate-buffered saline (PBS) followed by staining with Alexa Fluor 488–conjugated WGA (1:10 in 1× PBS) (Invitrogen) for 1 hour at room temperature in a humidified chamber in the dark. Sections were again washed three times for 5 min with 1× PBS followed by mounting with coverslips using Fluoromount-G mounting media containing DAPI nuclear stain (Southern Biotech).
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9

Cryosectioning Embryos for Fluorescence

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Fixed embryos were washed in PBS and incubated in 10% sucrose for 30 min, followed by incubation in 30% sucrose for 4 h at room temperature. Embryos were then incubated in OCT (Tissue-Tek) overnight at 4°C and cryo-embedded in OCT by freezing on dry ice. Cryo-sections were cut at a 12 μm thickness on a Leica CM3050S cryostat. Cryo-sections that were not stained as whole-mount embryos were washed in PBS then counterstained by incubation in 5 μg/ml Hoechst in PBS for 30 min. Prior to mounting, sections were washed in PBS, and then in water, and mounted in Fluoromount G mounting media (Southern Biotech).
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10

Immunohistochemistry of Inhibitory Synapses in Mouse Brain

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ST3ΔLRR9/ΔLRR9 and WT littermate mice at P21–P25 were anesthetized with isoflurane, perfused transcardially with 4% PFA + 0.1% glutaraldehyde in 0.1 M phosphate buffer, pH 7.4 (PB). Brains were then dissected out, post-fixed in the same solution for 1 h at RT, and then cryoprotected overnight in 30% sucrose in 1× PB at 4°C. Coronal brain sections (40 μm) were collected at −20°C with a cryostat (Leica CM1050). After washing with 1xPBS, brain sections were incubated in the blocking solution (0.2 % Triton X-100 and 5 % normal goat serum in 1xPBS) for 1 h at RT under gentle agitation, and followed by incubation at 4°C with primary antibodies in 1xPBS containing 0.2 % Triton-X with 3 % normal goat serum (anti-vGAT, 1:4000, rabbit SYSY; anti-Gephyrin, 1:1000 mouse, SYSY) for 48 h. Brain sections were then washed 3 times (20 min each time) in 1xPBS, incubated with secondary antibodies (1:1000, Alexa 488, 555, Thermo Fisher Scientific) for 1 h at RT, and followed by washing for 3 times (20 min each time) in 1xPBS. Brain sections were then mounted on superfrost slides and covered with DAPI-containing Fluoromount G mounting media (Southern Biotech).
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