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16 protocols using rabbit anti pgc 1α

1

Immunohistochemical Analysis of Brain Markers

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Brain sections were permeabilized with 0.3% Triton X-100 for 10 min and then washed. Nonspecific staining was blocked with 3% BSA for 1 h. The sections were incubated with primary antibodies overnight at 4 °C. Primary antibodies included rabbit anti-PGC-1α (1:300, Abcam), goat anti-Iba-1 (1:800, Abcam), mouse anti-eGFP (1:250, Abcam), rabbit anti-Iba-1 (1:500, Wako), rabbit anti-GFAP (1:1000, Abcam), rabbit anti-NeuN (1:500, Abcam), rabbit anti-NLRP3 (1:50, Abcam), rabbit anti-ASC (1:50, Santa Cruz), goat anti-GFAP (1:1000, Abcam), and mouse anti-NeuN (1:1000, Abcam). After incubation with primary antibodies, the sections were washed with PBS (5 × 5 min) and then incubated with appropriate secondary antibodies at room temperature for 1 h. For the analysis of neuronal apoptosis, brain sections were incubated with TUNEL reagents following the manufacturer’s guidelines.
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2

Comprehensive Cardiac Tissue Analysis

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Heart sections were deparaffinized, permeabilized, blocked, and incubated with rabbit antialpha smooth muscle actin (α-SMA, Abcam, 1:300), mouse anti-Von Willebrand factor (vWF, Abcam, 1:300), rabbit anti-CD31 (Abcam, 1:100), mouse anti-α-SMA (Abcam, 1:200), mouse antimyosin heavy chain (MHC, R&D, 1:50), rat anti-Ki67 (Thermo Fisher, 1:250), mouse anti-α-actinin (Sigma, 1:200), rabbit anti-PGC1α (Abcam, 1:300), rabbit anti-CD68 (Abcam, 1:500), mouse anti-CD206 (Abcam, 1:500) or CM-H2DCFDA (Thermo Fisher, 1:150) overnight at 4 °C. Corresponding secondary antibodies were stained for 1 h at room temperature. Nuclei were stained with DAPI. Fluorescent images were taken by a confocal microscope (Olympus FV1200). Hematoxylin and eosin staining, picrosirius red staining, and TUNEL staining were also performed.
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3

Immunohistochemical Assessment of Brain Tissues

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We took the paraffin-embedded brain tissues to carry out immunohistochemical assessment. In brief, the paraffin sections were deparaffinized and immersed in sodium citrate buffer (10 mmol/L, pH 6.0) and subjected to microwave antigen retrieval for 15 min. Subsequently, the sections were incubated in 0.3% H2O2 for 15 min and blocked with 10% serum for 15 min. The sections were treated with one of the following primary antibodies, rabbit anti-SIRT1 (1:200, Abcam), rabbit anti-FOXO1 (1:100, CST), and rabbit anti-PGC1α (1:300, Abcam), and incubated overnight at 4°C. Then, the sections were incubated with secondary antiserum for 40 min at room temperature. Finally, the sections were stained using DAB developer kits. The expressions of SIRT1, FOXO1, and PGC1α were measured by the integrated optical density (IOD) using Image-Proplus 6.0 software.
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4

Western Blot Analysis of Mitochondrial Proteins

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Total proteins were extracted in each group using RIPA buffer (CellNest, Minato, Tokoy, Japan) with Protease Inhibitor Cocktail Set III (1:1000, Millipore, Billerica, MA, USA). Protein concentration was measured using the Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific), according to the manufacturer’s protocol. Protein samples were separated by SDS-PAGE, transferred to a polyvinylidene difluoride (PVDF) membrane, blocked with 5% skim milk in Tris-buffered saline (TBS), and probed using various antibodies. The Western blots were visualized using ECL (Bio-rad) and exposed to Amersham™ Imager 600 (GE Healthcare Life Sciences, Uppsala, Sweden). The equivalence of protein loading was verified by probing for actin. The antibodies used were as follows: mouse anti-Mfn2 (1:500, Abcam); mouse anti-HO-1 (1:500, Abcam); rabbit anti-PGC1α (1:1000, Abcam); rabbit anti-iNOS (1:1000; Cell Signaling); rabbit anti-Nrf2 (1:1000, Abcam); rabbit anti-pink1 (1:500, Novus Biologicals, CO, USA); mouse anti-parkin (1:1000, Cell Signaling); mouse anti-β-actin (1:1000, Santa Cruz); horseradish peroxidase-conjugated anti-rabbit or -mouse antibodies (1:2500, Abcam).
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5

Western Blot Analysis of Mitochondrial Proteins

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MnSOD, CORE II, and PGC1α protein expression were analyzed by western blot using a rabbit anti PGC1α (1:1000), mouse anti CORE II (1:1000) (both from Abcam, Cambridge, MA); rabbit anti MnSOD (1:1000) and mouse anti β-actin (1:1000) (Sigma Aldridge, St. Louis, MO) served as a loading control. The intensity of western blot signals was quantified by densitometry using Image analysis software (Alpha Innotech, USA), normalized to, and expressed as ratios to the loading control β-actin.
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6

Exosomal Protein Profiling by Western Blot

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Exosomes, cells, or tissues after indicated treatments were harvested and subjected to radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology, China) supplemented with protease inhibitor cocktail (Roche). Purified protein was separated in 12% SDS-PAGE (120 V for stacking gel and 160 V for separation gel) and then transferred to a nitrocellulose membrane with an ice bath. The nitrocellulose membrane was blocked with 5% bovine serum albumin for 1 h and then incubated overnight with primary antibodies at 4°C. Antibodies used were mouse anti-GM130, rabbit anti-CD9, rabbit anti-TSG101, rabbit anti-PGC1α, and rabbit anti-GAPDH (all from Abcam). The membrane was then incubated for 1 h with the corresponding secondary antibodies at room temperature and visualized using the enhanced chemiluminescence (ECL) Prime western blotting detection reagent (GE Healthcare, Buckinghamshire, UK).
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7

Immunoblot Analysis of Mitochondrial Proteins

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Excised TA muscles were dissolved in total protein extraction buffer (keyGEN Biotech, Nanjing, China) with protease and phosphatase inhibitors. The total protein (30 μg) was fractionated on 6–12% sodium dodecyl sulfate (SDS) polyacrylamide gels and transferred to nitrocellulose membranes (Millipore, Billerica, MA, USA) by electroblotting. The membranes were blocked in Tris-buffered saline containing 5% milk and then incubated overnight at 4 °C with one of the following primary antibodies: rabbit anti-TFAM (Cat No: ab131607, Abcam, Cambridge, MA, USA), rabbit anti-PGC-1α (Cat No: 19142-1, Abcam), rabbit anti-PFKP (Cat No: 8164T, CST, Danvers, MA, USA), rabbit anti-phosphor-ACC (Cat No: 3661s, CST), rabbit anti-ACC (Cat No: 3662s, CST), rabbit anti-COX 1 (Cat No: A6564, ABclonal, Wuhan, Hubei, China), rabbit anti-NDUFS3 (Cat No: A8013, ABclonal), rabbit anti-SDHA (Cat No: A2594, ABclonal), rabbit anti-ATP5A1 (Cat No: A5884, ABclonal), rabbit anti-UQCRC2 (Cat No: A4184, ABclonal), mouse anti-GAPDH (Cat No: sc-32233, Santa Cruz, Felton, CA, USA) or mouse anti-β-actin (Cat No: sc-69879, Santa Cruz).
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8

Neuroprotective Mechanism of TC-G 1008

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The expression levels of GPR39, SIRT1, PGC-1α and Nrf2 were measured at 0 h, 6 h, 12 h, 24 h, 48 h, 72 h and 7 days post-HIE by Western blot following the manufacturer’s recommendations [34 (link), 35 (link)]. To analyze whether GPR39 receptor and SIRT1/PGC-1α/Nrf2 pathway were involved in the neuroprotective effects of TC-G 1008, the expression levels of GPR39, SIRT1, PGC-1α and Nrf2, and pivotal inflammatory cytokines IL-6, IL-1β, TNF-α were assessed via Western blot. RIPA lysis buffer (Santa Cruz Biotechnology, USA) was used to obtain whole cell lysates. Primary antibodies used were rabbit anti-GPR39 (1:500, Bioss), mouse anti-SIRT1 (1:2000, Abcam), rabbit anti-PGC-1α (1:1000, Abcam), rabbit anti-Nrf2 (1:1000, Abcam), rabbit anti-interleukin (IL)-1β (1:1000, Abcam), rabbit anti-interleukin (IL)-6 (1:1000, Abcam), mouse anti-TNF-α(1:500, Abcam) and mouse anti-β-actin(1:3000, Santa Cruz). The next day, the anti-rabbit (or anti-mouse) secondary antibodies (1:3000, Santa Cruz Biotechnology, USA) were incubated at room temperature for 1–2 h. The gray values were quantified and analyzed by Image J software (NIH).
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9

Protein Expression Analysis in Hippocampal Neurons

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The total protein was extracted from primary-cultured hippocampal neuronal cells and rat brain tissues using the total-protein extraction kit with Protease Inhibitor Cocktail (Thermo Fisher, Waltham MA, United States). Protein samples containing 60 μg proteins were separated with 8–12% sodium dodecyl sulphate (SDS)-PAGE gel and then transferred onto PVDF membranes (Millipore, Billerica MA, United States). The membranes were then incubated for 1 h with 5% fat-free milk and incubated with the primary antibodies, rabbit anti-SIRT1 (1:200, Biorbyt), rabbit anti-FOXO1 (1:4,000, Abcam), rabbit anti-PGC1α (1:1,000, Abcam), rabbit anti-Bax (1:1,000, Abcam), rabbit anti-Bcl-2 (1:500, Abcam), and rabbit anti-GAPDH (1:10,000, Abcam), overnight at 4°C. Then, the membranes were incubated with appropriate secondary antibodies (1:5,000, Thermo) for 1 h at room temperature. Ultimately, the blots were visualized by ECL chemiluminescence and the protein quantification was measured using Image J software. The relative protein levels were normalized with GAPDH.
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10

Immunoblotting for GLUT4 and PGC-1α

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For immunoblotting, 75 μg of total protein per sample were loaded into each lane for PGC-1α and GLUT4 quantification. Three controls were run simultaneously with each gel: a wide-range molecular weight marker (Bio-Rad) and total protein isolated from adult rat heart and liver. For each gel, at least one sample per group was included and grouped according to muscle type. Total protein was separated on 7.5% gels for 20 min at 80 V followed by 125 V for 1 h and then transferred to PVDF membranes for 1 h at 100 V. Membranes were blocked in 5% non-fat dry milk in PBS-T for 0.5 h then incubated with either a rabbit anti-GLUT-4 (Milipore Inc., Billerica, MA; 1:600) or a rabbit anti-PGC-1α (Abcam, Cambridge, MA; 1:1000) antibody overnight at 4°C. After washing 3 × 10 min in PBS-T, the membranes were incubated in an anti-rabbit IgG-HRP (Jackson Immunology, West Grove, PA; 1:1000) secondary antibody. Membranes were developed using Thermo Scientific Pierce ECL Western Blotting Substrate. Densitometry and quantification were completed using the ChemiDoc MP Imaging system (Bio-Rad) and Image J software (Rasband, 1997–2007 ).
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