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12 protocols using axiovert 40 inverted microscope

1

Phase-contrast Microscopy for MCS Imaging

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On a routine basis, cell and spheroid images were captured using a phase-contrast microscope (Axiovert 40 inverted microscope, ZEISS) at 4X and 10X objective lens via program (iSolution Lite, IMT i-Solution Inc.) For MCSs, the images were measured with the diameter and projection area using ImageJ (the Research Services Branch, National Institute of Mental Health, Bethesda, Maryland, USA.). The MCS size, which was deviated more than 10% of the average, was excluded from the experiment.
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2

Cell Invasion Assay with CCL3 Modulation

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The cell invasion assay was performed in 24-well plates using modified Boyden chamber inserts with a polycarbonate filter membrane containing 8 μm pores. Matrigel (Cat.35423C, BD Biosciences, Bedford, MA) was diluted 1:1 with a serum-free medium and used to coat the filter membranes. The cells (2×105) were pre-treated with CCL3 (Cat. DY270, R&D Systems) (10 ng/mL), antibody anti-CCL3 (FL-92; Santa Cruz Biotechnology) (20 µg/mL) or Evasin-1 (AS9001965, 10-7 M) (Serono Pharmaceutical Research Institute SA, Geneva, Switzerland), a chemokine-bind protein that depletes CCL3 [50 (link)]. After 45 minutes, the cells were re-suspended in 250 μL of serum-free DMEM and seeded onto the upper compartment. DMEM containing CCL3 (10 ng/mL) was used in the lower chamber for stimulation. After 72 h, the filters were fixed in 10% formalin for 15 min. The cells on the lower surface were stained with Giemsa (Sigma-Aldrich). Five fields were photographed at 200x original magnification using a Zeiss Axiovert 40 inverted microscope and were processed using the AxioVision Rel. 4.8.2 software (Carl Zeiss).
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3

Colony Formation Assay of hUVECs and hFBs

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The hUVECs and hFBs were seeded in a six-well plate at a density of 1×103 cells/well and treated with oxostephanine at four different concentrations (25, 5, 1 and 0.2 µM) for 24 h. The medium was refreshed, and the cells were then incubated in a humidified incubator with 5% CO2 at 37°C for a further 10 days. The cells were then stained with Giemsa (Millipore, Sigma) for 5 min at room temperature after fixing with 70% methanol for 10 min at room temperature. The formation of colony units of endothelial cells (CFU-ECs) and fibroblasts (CFU-Fs) was observed, photographed and counted using an Axiovert 40 Inverted Microscope (Carl Zeiss AG) (magnification, ×4). The number of colonies was determined per 1,000 cells at seeding.
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4

Matrigel-based Tube Formation Assay for Evaluating Antiangiogenic Effects

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A Matrigel-based tube formation assay was used to assess the inhibitory effect against VMs. Briefly, 200 μL of Matrigel (BD Biosciences, Franklin Lakes, NJ) was plated onto 24-well cell plates, and incubated for 30 min until solidification. C6 cells (1 × 104) were resuspended with serum-free medium containing free DOX, DOX-HA-LPs, and free HA, and seeded onto the Matrigel. The final concentration of DOX was 5 μg/mL. The content of HA in free HA was the same with that in DOX-HA-LPs. After incubation at 37 °C for 1 h and 4 h, the state of VMs was analyzed by Carl Zeiss Jena Axiovert 40 inverted microscope (Oberkochen, Germany).
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5

Assessing Cellular DNA Damage Post-Chemotherapy

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Cells engrafted with ascites form of Krebs-2 tumor were injected with CP (200 mg/kg). Then, 0, 24, 30, and 42 h post CP injection, ascites cells were collected, washed in PBS and embedded in low-melting agarose plugs (Low Melt Ultra-Pure DNA Grade Agarose, Bio-Rad) in 80 µL PBS at a density of 1000 cells per block. Next, agarose blocks were immersed in a lysis buffer (50 mM EDTA, 1% N-Lauroylsarcosine [Serva], 1 mg/mL proteinase K) for 30 min at 50 °C, which was replaced with 0.5 M EDTA. Agarose-embedded cells were then washed in TE buffer (10 mM TRIS-HCl, pH 7.6; 1 mM EDTA) for 15–30 min. The blocks were similarly oriented and subjected to electrophoresis (30 min, 1 V/cm). DAPI staining was done by placing the blocks into 500 µL of DAPI solution (0.5 µg/mL), transferred onto the glass slides and analyzed under the fluorescence microscope Axiovert 40 Inverted Microscope (Zeiss).
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6

Transwell Assay for Cell Migration and Invasion

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The in vitro cell migration and invasion assays were performed in 24-well plates (Corning, Inc., New York, USA) using modified Boyden chamber inserts with a polycarbonate filter membrane containing 8-μm pores. For the invasion assay, matrigel (BD Biosciences) was diluted 1:1 with serum-free medium and used to coat the filter membranes. The cells (1×105) were suspended in 250 μl of serum-free DMEM and seeded onto the upper compartment of the transwell chamber; DMEM containing 10% FBS was used in the lower chamber for stimulation. After a 24 h or 72 h incubation for the migration or invasion analysis, respectively, the medium in the upper chamber was removed, and the filters were fixed in 10% formalin for 15 min. The cells on the lower surface were stained with 4′, 6-diamidino-2-phenylindole (DAPI; Sigma). Five fields were photographed at ×200 original magnification using a Zeiss Axiovert 40 inverted microscope and processed using the AxioVision Rel. 4.8.2 software. The cells were counted using the ImageJ program [43 (link)]. The migration and invasion data are reported as the number of cells per microscopic field. Five fields were analyzed.
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7

Wound Healing Assay of B16F10-CD44+ Cells

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Migration and mobility of B16F10-CD44+ cells were assessed using a wound healing assay. Cultured cells were seeded into 12-well plates and grown to confluence, then the cell monolayer was scratched wound using a sterile pipette tip. Scratched cultures were exposed for 4 h to PTX formulations (equal to 10 µg/mL of PTX), then cultured in fresh medium for another 48 h. Digitized images of the wound area were captured using a Zeiss Axiovert 40 inverted microscope (Germany).
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8

Immunofluorescence Imaging of Cell Markers

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Immunofluorescence was performed with primary antibodies against E-cadherin (24E10; #3195; Cell Signaling), pan-cytokeratin (pan-CTKR; ab6401; Abcam), cofilin (#3312; Cell Signaling), F-actin (NH3; MA1-80729; Thermo-Scientific), β-actin (C4: sc-47778; Santa Cruz), and vimentin (Clone V9; V6389; Sigma). Cells were incubated with either an anti-rabbit antibody conjugated with Alexa 488 or an anti-mouse antibody conjugated with Alexa 594 (Invitrogen). The nuclei were stained with DAPI. The digital images were obtained using a Zeiss Axiovert 40 inverted microscope and processed using the AxioVision Rel. 4.8.2 software (Carl Zeiss).
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9

Ovarian Cancer Spheroid Phenotyping

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Cell spheres were cultured under standard differentiating conditions (DMEM/F12 supplemented with 10% FBS) and in Ultra Low Attachment plates (Corning). After 14 days in culture, cell morphology was assessed using a Zeiss Axiovert 40 inverted microscope with Axio-Vision software. Cell surface markers (CD44 and CD117) were detected by immunofluorescence staining. An epithelium differentiation marker, Cytokeratin-7 (CK-7), and ovarian cancer antigen-125 (CA125) were used for immunofluorescence staining, followed by incubation with a FITC-labeled goat anti-mouse or anti-rabbit IgG. Nuclei were counterstained with 4, 6-diamidino-2-phenylindole (DAPI; Santa Cruz).
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10

Quantifying Adipocyte Lipid Content

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Samples at day 21 were fixed in 4% neutral buffered formalin, washed with 2-propanol, and stained with an Oil Red O working solution (0.5% Oil Red O in 2-propanol, 60% in H2O). After a further wash in 2-propanol, the cultures were washed and maintained in H2O for imaging. Pictures were acquired using an Axiovert 40 inverted microscope, CP-Achromat 5×/0.12 objective, equipped with an Axiocam 105 color camera (Carl Zeiss Microscopy GmbH, Jena, Germany). At least 10 representative pictures were taken for further image analysis. Images were analyzed with Fiji/ImageJ software (NIH, Bethesda, MD, USA). Briefly, raw images were imported and converted to RGB. A color threshold was applied to select stained cells, then the area covered by the selection was measured (in µm2). The percentage out of the total area was calculated. Final results were calculated as the average % area of the 10 images.
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