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Maloney murine leukemia virus reverse transcriptase

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Maloney murine leukemia virus reverse transcriptase is an enzyme that catalyzes the synthesis of DNA from an RNA template. It is a critical component in various molecular biology techniques, such as reverse transcription-PCR (RT-PCR).

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10 protocols using maloney murine leukemia virus reverse transcriptase

1

Quantitative Real-Time PCR of Cardiac Fibroblast RNA

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Total RNA was isolated from cardiac fibroblast cultures in TRIZOL (Life Technologies, Grand Island, NY, USA), reverse transcribed from an oligo dT-primer with maloney murine leukemia virus reverse transcriptase (Thermo Scientific, Waltham, MA, USA) and PCR performed with FastStart DNA Master SYBR Green mix (Roche Diagnostics, Indianapolis, IN, USA) as described previously [65 (link)]. The temperature profile included initial denaturation (10 min at 95 °C), 45 cycles of denaturation (15 s at 95 °C), annealing (5 s at 58–62 °C) and elongation with fluorescence monitoring (16 s at 72 °C) with the Siva (5′-TTCAGAACCACACGGCTAC-3′/5′-TTCCTCTCTTTTTCCTCCC-3′) and B2-microglobulin (B2M) (5′-GATGAGTATGCCTGCCGTGTG-3′/5′-CAATCCAAATGCGGCATCT-3′) primer sequences. Analyses were performed on a Lightcycler (Roche, Mannheim, Germany, 2001) and data were analyzed with LCDA Version 3.5.3 (Roche). Specificity of amplification products was determined with melting curve analyses [66 (link)]. Standard curves for expression of each gene were generated by serial dilution of known quantities of respective cDNA gene templates. Gene expression levels were quantified by normalization to the B2M signal.
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2

RNA Extraction and RT-qPCR Analysis

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TRIzol (Thermo Fisher Scientific, Inc., USA) was used to extract RNA following the manufacturer's protocol. For reverse transcription, the components in a total volume of 10 µl were used as follows: 3 µg total RNA; 10 mM deoxyribonucleotide triphosphate; 0.5 µg oligo deoxythymine; 20 U RNasin®; 200 U Maloney murine leukemia virus reverse transcriptase (Thermo Fisher Scientific, Inc., USA). The primer sequences were as follows: RBM10 sense, 5′-GCACGACTATAGGCATGACAT-3′; antisense, 5′-AGTCAAACTTGTCTGCTCCA-3′; GAPDH sense, 5′-GAAGGTGAAGGTCGGAGTC3′; antisense, 5′-GAAGATGGTGATGGGATTTC-3′. PCR was performed with 25–30 cycles as follows: 95°C for 30 sec; 55°C for 30 sec; 72°C for 1 min. Densitometry analysis was performed with ImageMaster VDS-CL Image Master 1.0.3.7 software (GE Healthcare Bio-Sciences, Pittsburg, PA, USA).
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3

RNA Extraction and RT-PCR for Gene Expression

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TRIzol (Thermo Fisher Scientific, Inc.) was used to isolate RNA following the manufacturer's protocol. For reverse transcription, the components in a total volume of 10 µl were used as follows: 3 µg total RNA; 10 mM deoxyribonucleotide triphosphate; 0.5 µg oligo deoxythymine; 20 U RNasin®; 200 U Maloney murine leukemia virus reverse transcriptase (Thermo Fisher Scientific, Inc.). The primer sequences were as follows: RBM10 sense, 5′-GCACGACTATAGGCATGACAT-3′; antisense, 5′-AGTCAAACTTGTCTGCTCCA-3′; GAPDH sense, 5′-GAAGGTGAAGGTCGGAGTC-3′; antisense, 5′-GAAGATGGTGATGGGATTTC-3′. PCR was performed with 25–30 cycles as follows: 95°C for 30 sec; 55°C for 30 sec; 72°C for 1 min. Densitometry analysis was performed with ImageMaster VDS-CL Image Master 1.0.3.7 software (GE Healthcare, Chicago, IL, USA).
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4

Quantitative RT-PCR Analysis of AT1R and gp91phox in Brainstem and Hypothalamus

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Total RNA was extracted from the entire brainstem and hypothalamus with a RNeasy Mini KitTotal RNA Isolation System (Qiagen, Valencia, CA), after which cDNA was synthesized by means of Maloney murine leukemia virus reverse transcriptase (Invitrogen Life Technologies, Carlsbad, CA). PCR amplification was performed by means of a PTC‐100 Programmable Thermal Controller (MJ Research, Waltham, MA) as follows: 1 cycle at 95°C for 15 min, followed by 35 cycles of 94°C for 45 sec, 55°C for 45 sec, and 72°C for 1 min. The bands were analyzed using UVP BioImaging Systems (Upland, CA). The primer sequences for AT1R and gp91phox mRNA were as follows:

AT1R

Primer (S): GTGTTCCTGCTCACGTGTCT

Primer (AS): GATGATGCAGGTGACTTTGG

Probe: ATGAAGTCTCGCCTCCGCCG

gp91

Primer (S): GTGAGAGGTTGGTTCGGTTT

Primer (AS): CACCTCCATCTTGAATCCCT

Probe: CACCAAGGTGGTCACCCACCC

GAPDH

Primer (S): ACAACTTTGGCATTGTGGAA

Primer (AS): GATGCAGGGATGATGTTCTG

Probe: CATGCCATCACTGCCACCCA

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5

Quantifying Transcriptional Regulators via RT-qPCR

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Total RNA was extracted from cells with TRIzol reagent (Thermo Fisher Scientific) according to the manufacturer's instructions. RNA was treated with Turbo DNase (Invitrogen Ambion, Thermo Fisher Scientific) to eliminate any residual DNA from the preparation. Total RNA (1 μg) was reverse‐transcribed using the Maloney murine leukemia virus reverse transcriptase (Invitrogen) and 0.25 μg of Anchored Oligo(dT) 20 Primer (Invitrogen; 12577‐011). To control specificity of the amplified product, a melting curve analysis was carried out. No amplification of unspecific product was observed. Amplification of cyclophilin B (Ppib) was carried out for each sample as an endogenous control. Primer sequences were forward, 5′ GATCTCCTCCGCAGTCTGG 3′, and reverse, 5′ ACACAATGGGTATCCGGTCT 3′, for mouse Sall2 E1A; forward, 5′AACGGAGACCCCAACAGTTA 3′, and reverse, 5′ TGGGTCAGTGCAACATGAGT 3′, for mouse Sall2E1; forward, 5′ GTGCTGGGAATGCAAGCCATATCT 3′, and reverse, 5′ AAGCGGCTGGAAATGGCTTAGT 3′, for Ccne1; forward, 5′ AGGAAGCGGTCCAGGTAGTT 3′, and reverse, 5′ AGTGCGTGCAGAAGGAGATT 3′, for Ccnd1; forward, 5′ TTGTGGCCTTAGCTACAGGA 3′, and reverse, 5′ GCTCACCGTAGATGCTCTTT3′, for Ppib.
The relative expression of the Ccne1, Ccnd1, and Sall2 genes was calculated using the standard curve method, and all mRNA expressions were relative to Ppib.
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6

Quantitative RT-PCR Protocol for Itgb1 Gene

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Total RNA was extracted from cells with TRIzol reagent (Invitrogen; 15596026) according to the manufacturer’s instructions. RNA was treated with Turbo Dnase (Invitrogen; AM1907) to eliminate any residual DNA from the preparation. RNA (1 μg) was reverse transcribed using the Maloney murine leukemia virus reverse transcriptase (Invitrogen; 28025-01) and 0.25 μg of Anchored Oligo (dT) 20 Primer (Invitrogen; 12577-011). Real-time PCR was performed using KAPA SYBR FAST qPCR Master Mix (2X) kit and the AriaMX Real-Time PCR System (Agilent, Santa Clara, CA, United States) according to the manufacturer’s instructions. The thermal cycling variables used were as follows: 40 cycles at 95°C for 5 s and 60°C for 20 s. To control specificity of the amplified product, a melting-curve analysis was carried out. No amplification of unspecific product was observed. Amplification of RNA polymerase II (Polr2) was carried out for each sample as an endogenous control. Primers used for real-time reactions are summarized in Supplementary Table S1. The relative expression ratio of the Itgb1 gene was calculated using the standard curve method, using untreated Sall2+/+ iMEFs as reference.
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7

Quantitative RT-PCR Analysis of Renin and Jagged1

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Whole kidneys from control and mutant animals were removed and placed in RNAlater (Ambion, Austin, TX) overnight in 4°C and then stored in −20°C. Total RNA was isolated using Trizol extraction (Life Technologies, Grand Island, NY) according to the manufacturer’s instructions. cDNA was prepared from 2 μg of RNA using Maloney murine leukemia virus reverse transcriptase (Life Technologies, Grand Island, NY) and an oligo(dT) primer according to the manufacturer’s instructions. Quantitative reverse transcription polymerase chain reaction (RT-PCR) was performed using SYBR Green I (Invitrogen Molecular Probes, Eugene, OR) in a CFXConnect system (BioRad, Hercules, CA). Renin and Jagged1 mRNA expression was normalized to GAPDH expression, and the changes in expression were determined by the ∆∆Ct method and are reported as relative expression compared to control mice. The following primers were used: renin forward 5’-ACAGTATCCCAACAGGAGAGACAAG-3’ and renin reverse 5’-GCACCCAGGACCCAGACA-3’; Jagged1 forward 5’-GCAACGACCGTAATCGCATC-3’ and Jagged1 reverse 5’-CCATTGCCGGCTAGGGTTTA-3’; GAPDH forward 5’-TTGATGGCAACAATCTCCAC-3’ and GAPDH reverse 5’-CGTCCCGTAGACAAAATGGT-3’.
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8

RNA Extraction and cDNA Synthesis in Mouse Embryos

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Total RNA was isolated from the yolk sacs and livers of mouse embryos using Trizol extraction (Life Technologies, Grand Island, NY, USA) according to manufacturer’s instructions, as previously described51 (link). Complementary DNA (cDNA) was prepared from 2 µg RNA using Maloney murine leukemia virus reverse transcriptase (Life Technologies) and an oligo(dT) primer according to the manufacturer's instructions. PCR was performed on 2 µl cDNA using Taq DNA polymerase (Promega, Madison, WI, USA) in an Eppendorf thermocycler51 (link).
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9

RNA Extraction and Reverse Transcription

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TriZol, oligo dT18 primer, reverse transcriptase buffer, dNTPs, murine Maloney leukemia virus (MMLV) reverse transcriptase, RNase inhibitor, and agarose were obtained from Invitrogen Life Technologies (Carlsbad, CA, USA). Ethidium bromide (EtBr) was purchased from Sigma (St. Louis, MO, USA), and dextran sulfate sodium (DSS; molecular weight: 36,000-50,000) from MP Biomedical (Solon, OH, USA). All chemicals used were of analytical grade.
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10

MTT, DCFH-DA, and DPPH Protocols for Cellular Assays

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3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyl tetrazolium bromide (MTT), 2', 7'-dichlorodihydrofluorescin diacetate (DCFH-DA), 1,1-diphenyl-2-picrylhydrazyl (DPPH), and deoxyribose were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS), penicillin-streptomycin solution, and 0.05% trypsin-0.53 mM EDTA were purchased from Grand Island Biological Company (Grand Island, NY, USA). TRIzol reagent, oligodT18 primer, murine maloney leukemia virus (MMLV) reverse transcriptase, RNase inhibitor, reverse transcriptase buffer, dNTPs, ethidium bromide (EtBr), and agarose were purchased from Invitrogen Life Technologies (Carlsbad, CA, USA). Chemicals used were of standard analytical grade.
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