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Tb green premix ex taq reagent

Manufactured by Takara Bio
Sourced in Japan, United States, China

TB Green Premix Ex Taq reagent is a ready-to-use solution for real-time PCR amplification. It contains the necessary components, including a DNA polymerase, buffer, and SYBR Green I dye, to facilitate efficient and reliable quantification of target DNA sequences.

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17 protocols using tb green premix ex taq reagent

1

Quantitative Real-Time PCR Analysis of C2C12 Myotubes

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Total RNAs were extracted from C2C12 myotubes using RNAiso Plus reagent (Takara, Guangdong, China), in accordance with the manufacturer’s instructions. For mRNA, total RNA (2 µg) was reverse-transcribed to cDNA in a final volume of 20 µL using PrimeScript™ RT Reagent Kit (Takara, Guangdong, China). For MicroRNA, reverse transcripts were synthesized using Mir-X™ miRNA First-Strand Synthesis Kit (Clontech, Mountain View, CA, USA). GAPDH or U6 was used as a candidate housekeeping gene for mRNA and miRNA, respectively. TB Green™ Premix Ex Taq reagents (Takara, Guangdong, China) and sense and antisense primers (200 nM for each gene) were used for quantitative real-time polymerase chain reaction (qRT-PCR). PCR reactions were performed using the CFX Connect Real-Time System (BIO-RAD, Hercules, CA, USA). Primer sequences are presented in Table S1.
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2

Quantitative Analysis of RNA Expression

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Total RNA was extracted from cells using the TRIzol reagent (Invitrogen) and the cDNA was synthesized via reverse transcription using avian myeloblastosis virus reverse transcriptase following the manufacturer’s instructions. The quantitative PCR experiment was performed using the TB Green Premix ExTaq reagents (TaKaRa) on the QuantStudio5 QPCR system (Applied Biosystems). Relative expression of mRNA was normalized to the expression of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) using the 2−ΔΔCT method. All qPCR specific primers are listed in Table 2.

The qPCR primers used in this study

GenePrimers(5′ → 3′)
SVVForward: AGAATTTGGAAGCCATGCTCT
Reverse: GAGCCAACATAGARACAGATTGC
GAPDHForward: ACATGGCCTCCAAGGAGTAAGA
Reverse: GATCGAGTTGGGGCTGTGACT
IFN-βForward: GCTAACAAGTGCATCCTCCAAA
Reverse: AGCACATCATAGCTCATGGAAAGA
MXAForward: GAGGTGGACCCCGAAGGA
Reverse: CACCAGATCCGGCTTCGT
GBP1Forward: AGCACCTTCGTCTACAACAGC
Reverse: TCAGCCGAGTCCTCAATCC
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3

Quantitative RT-PCR for Antiviral Genes

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RT-qPCR was performed as previously described [50 (link)]. In brief, total RNA was extracted with RNeasy Mini Kit (Qiagen, Hilden, Germany). Genomic DNA was removed and cDNA was synthesized with PrimeScript RT Reagent Kit with gDNA Eraser (TaKaRa Bio, Kusatsu, Japan). Real-time PCR was performed with TB green Premix Ex Taq reagents (TaKaRa) and CFX96 Touch Real-Time PCR Detection System (Bio-Rad, CA, USA). The normalized value for each sample was derived from the relative quantity of target mRNA divided by the relative quantity of hypoxanthine phosphoribosyl transferase 1 (HPRT1) mRNA. The primers for ISG15, OAS1, CXCL10, IRF1 have been described previously [50 (link)]. Other primers were 5′- GACGCTGTCTTTGCATAGGC-3′ and 5′-GGATTTAGGCATCGTTGTCCTTT-3′ for CXCL11; 5′- TGACACTGGCAAAACAATGCA-3′ and 5′- GTCCTTTTCACCAGCAAGCT-3′ for HPRT1.
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4

Quantifying Gene Expression via qPCR

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Total RNA was isolated using TRIzol reagent (Invitrogen). Gene expression was assayed using TB Green Premix Ex Taq reagent (TAKARA) according to the manufacturer’s protocol and normalized to GAPDH mRNA levels. All experiments were assayed on an ABI ViiA 7 Real-Time PCR System (Applied Biosystems). All primers for SYBR Green real-time qPCR were synthesized by Sangon Biotech. The primers are as follows: mmu-IFN-α-forward (5′-3′), ATG GCT AGG CCC TTT GCT TTC; mmu-IFN-α-reverse, CTG TGT ACC AGA GGG TGT AGT T; mmu-CXCL10-forward, GAC GGT CCG CTG CAA CTG; mmu-CXCL10-reverse, GCT TCC CTA TGG CCC TCA TT; mmu-IL-6-forward, CCA GTT GCC TTC TTG GGA CT; mmu-IL-6-reverse, GTC TCC TCT CCG GAC TTG TG; mmu-GAPDH-forward, CAG AAC ATC ATC CCT GCA TC; and mmu-GAPDH-reverse, CTG CTT CAC CAC CTT CTT GA.
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5

Colon Total RNA Extraction and qRT-PCR

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RNeasy Mini Kit (Qiagen, Hilden, Germany) was used to extract the total RNA from the colon samples according to the product manual. The extracted total RNA was immediately reverse-transcribed to cDNA, and the cDNA was then stored at −80°C for further use. mRNA relative levels were measured in duplicate with TB Green Premix Ex Taq Reagent (TAKARA, Kusatsu, Japan) using an Applied Biosystems VIIA7 Real-time PCR system (Applied Biosystems, Waltham, MA, United States) (refer to Supplementary Table 1 for primer information). The relative mRNA expression levels of targeted genes was normalized by GAPDH expression.
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6

Rat Hepatocyte RNA Extraction and RT-qPCR

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Total RNA was extracted from rat hepatocytes using TRIzol reagent (TKR-9108, Takara, Japan) according to manufacturer's instructions. A reverse transcription reaction was then performed using a reverse transcription reagent with gDNA Eraser (TKR-RR047A, Takara, Japan) to reverse transcribe total RNA into cDNA, and finally using TB Green® Premix Ex Taq™ reagent (RR420A, Takara, Japan). Japan) RT-qPCR was performed on Step One Plus (Applied Biosystems, Carlsbad, CA, USA). β-actin is used as an internal reference gene to correct relative gene expression. The relative expression was calculated by 2-ΔΔCt. The primer sequences used in the study are supplemented in Supplementary Table S1.
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7

Quantification of mRNA Levels in K562 Cells

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Total RNA was extracted and purified from K562 cells using RNAiso Reagent (Takara, Japan) according to the manufacturer’s instructions. 1 μg of total RNA was reverse transcribed using the PrimeScript RT Reagent Kit (Takara, Japan) to detect relative mRNAs. Real-time PCR was performed in triplicates on an Applied Biosystem7900 quantitative PCR system (Applied Biosystems, USA) using TB Green Premix Ex Taq reagent (Takara, Japan). The Ct values obtained from different samples were compared using the 2−ΔCt method. GAPDH served as the internal reference gene.
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8

Quantifying Gene Expression in Laodelphax striatellus

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The total RNA of pools (50 L. striatellus) of second-to-fifth instar nymphs, female and male adults and various organs (central nervous system, salivary gland, intestine, ovary and testis) dissected with tweezers under an optical microscope from 100 L. striatellus adults were extracted by RNAiso plus (Takara), according to the manufacturer’s instructions. The cDNA was reverse-transcribed from 1 μg extracted total RNA with PrimeScript™ RT reagent kit with gDNA Eraser (Takara), following the manufacturer’s instructions. RT-qPCR was conducted by using IQ™ 5 multicolor real-time PCR detection system (BIO-RAD) with TB Green Premix Ex Taq reagent (Takara). The relative gene expression was normalized to an internal control gene, alpha tubulin (primers listed in Table S1), as we described previously [27 (link)], and calculated by 2−ΔΔCT (cycle threshold) method. Each experiment contained three independent biological and three technical replications.
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9

Quantifying Colon RNA Levels

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Total RNA was extracted from the colon tissues by the RNeasy plus Minikit (Qiagen, Hilden, Germany) and was immediately reverse-transcribed to cDNA and stored at −80 °C until further procedures. mRNA relative levels were measured in duplicate with TB Green Premix Ex Taq Reagent (TAKARA, Kusatsu, Japan) using an Applied Biosystems VIIA7 Real-time PCR system (Applied Biosystems, Waltham, MA, USA), and threshold cycle (ΔΔCT) was finally calculated to analyze the significant difference between groups. Primers are displayed in Table S2.
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10

Quantifying mRNA Expression in Mouse Tissues

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Total RNA in small intestine and liver tissues was extracted by applying TRIzol regent (Tiangen Biotech Co., Ltd., Beijing, China). EasyScript Plus cDNA synthesis kit (Takara Bio, Shiga, Japan) was used to synthesize cDNA according to the manufacturer’s protocol. qRT-PCR assay was carried out in a reaction system of 25 µl by applying TB Green Premix Ex Taq reagent (Takara Bio, Shiga, Japan) with the fluorescent PCR instrument (CFX96; Bio-Rad Laboratories Inc., Hercules, CA, USA). The amplification reaction was undertaken as follows: at 95 °C for half a minute, followed by 40 cycles at 95 °C for 5 s and at 60 °C for half a minute. Besides, β-actin, as a house-keeping gene, was used as a reference. Relative gene expression levels were determined using the 2 -ΔΔCt method. The primer sequences for the target genes are listed in Table S2.
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