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Bamhi

Manufactured by Addgene

BamHI is a type II restriction enzyme that recognizes and cleaves the DNA sequence 5'-GGATCC-3' and its reverse complement 5'-CCTAGG-3'. It is a commonly used tool in molecular biology and genetic engineering for the manipulation and analysis of DNA molecules.

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2 protocols using bamhi

1

Overexpression of Slc8a3 Isoform 1 in Cells

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The cDNA coding for isoform 1 (transcript variant 1) of Slc8a3 was obtained from GenBank
(NM_001167920.1). The coding region of Slc8a3 was amplified by PCR using primers (Table S2) and subcloned to the pmEGFP-C1 vector using restriction enzymes NheI and BamHI (Addgene plasmid #36412). The modified vector plasmid was confirmed by DNA sequencing and plasmid DNA was extracted by endotoxin free plasmid extraction kit (TIANGEN, China). 2 µg plasmid DNA of modified vector was diluted into 200 µL jetPRIME® buffer (Polyplus-transfection, Illkirch, France) and mixed. 4 µL jetPRIME® was added into mixed solution and incubated for 10 min at room temperature. 200 µL of transfection mix was added per well dropwise onto the cells in serum containing medium. The plates were incubated at 37 °C for 6 h and then the medium was changed.
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2

Generating HIF-overexpressing cell lines

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HIFs overexpressing cell lines were generated from HepaRG-TR (15 (link)). HIFs ORFs were excised from HA-HIF1alpha P402A/P564A-pcDNA3 (Addgene #18955), or HA-HIF2alpha-pcDNA3 (Addgene #18950) using BamHI and XbaI (New England Biolabs). The P402A/P564A double mutation prevents HIF1α hydroxylation and degradation. The ORFs were then inserted into the BamHI/XhoI digested pLenti CMV/TO Hygro empty (w214-1) (Addgene #17484) using T4 DNA ligase (New England Biolabs). All HIFs vectors were a gift from William Kaelin and pLenti CMV/TO Hygro empty (w214-1) was a gift from Eric Campeau & Paul Kaufman.
Preparation of lentiviral particles and transduction of HepaRG cells were performed based on protocols from Addgene. After each transduction step, HepaRG were selected with blasticidin (Invitrogen; 5 μg/mL; TetR) and puromycin (Sigma Aldrich; 10 μg/mL; sgRNAs) until non-transduced cells have fully died.
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