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3 protocols using anti sharpin antibody

1

Isolation and Analysis of TNFR1 Complex

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For isolation of the TNFR1-SC, transformed MEFs were stimulated with 3xFlag-2xStrep-TNF at 0.5 μg/mL for 15 min, and controls were left untreated. Cells were subsequently solubilised in lysis buffer (30 mM Tris HCl [pH 7.4], 150 mM NaCl, 2 mM EDTA, 2 mM KCl, 10% Glycerol, 1% Triton X-100, EDTA-free proteinase inhibitor cocktail (Roche, 5056489001) and 1x phosphatase-inhibitor cocktail 2 (Sigma, P5726-1ML) at 4°C for 30 min. The lysates were cleared by centrifugation, and 3xFlag-2xStrep-TNF (0.5 μg/mL/sample) was added to the untreated samples. Subsequently, the lysates were subjected to anti-Flag immunoprecipitation using M2 antibody coupled sepharose beads (Sigma, A2220-5ML) for 16 h. For FADD immunoprecipitation, transformed MEFs were treated with 20 μM zVAD-fmk (Abcam, ab120487) in the presence or absence of 100 ng/mL 6xHis-TNF for 3 h. Cells were lysed as described above and FADD was immunoprecipitated using anti-FADD antibody (Santa Cruz, sc-5559) and protein G Sepharose Beads (GE healthcare, 17-0618-01) at 4°C for 4 h. For Sharpin immunoprecipitation, anti-Sharpin antibody (ProteinTech, 14626-1-AP) was used. For all immunoprecipitations, the beads were washed three times with lysis buffer. Proteins were eluted in 50 μL of LDS buffer (NuPAGE, Invitrogen) containing 50 mM DTT. Samples were analysed by Western blotting.
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2

Antibody Reagents and Chemical Inhibitors

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Rabbit polyclonal anti-SHARPIN antibody, anti-C-MYC antibody, anti-CD44 antibody, anti-β-catenin and mouse monoclonal anti-GAPDH antibody were purchased from Proteintech. anti-β-catenin antibody and anti-β-Trcp1 antibody were obtained from Cell Signaling Technology (CST). Rabbit monoclonal and mouse monoclonal anti-HA tag, anti-Myc tag and anti-strep tag antibodies were from MBL. Anti-linear ubiquitin antibody (clone LUB9) was purchased from Merck Millipore. Normal mouse and rabbit anti-IgG antibodies were obtained from Beyotime. The detailed information of the antibodies was shown in Supplementary Table S1. Chemical reagents MG132 and puromycin were purchased from Beyotime. Bafilomycin A1 (lysosome inhibitor) was purchased from Selleckchem. Cycloheximide was obtained from APExBIO, and blasticidin was purchased from Solarbio.
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3

Isolation and Analysis of TNFR1 Complex

Check if the same lab product or an alternative is used in the 5 most similar protocols
For isolation of the TNFR1-SC, transformed MEFs were stimulated with 3xFlag-2xStrep-TNF at 0.5 μg/mL for 15 min, and controls were left untreated. Cells were subsequently solubilised in lysis buffer (30 mM Tris HCl [pH 7.4], 150 mM NaCl, 2 mM EDTA, 2 mM KCl, 10% Glycerol, 1% Triton X-100, EDTA-free proteinase inhibitor cocktail (Roche, 5056489001) and 1x phosphatase-inhibitor cocktail 2 (Sigma, P5726-1ML) at 4°C for 30 min. The lysates were cleared by centrifugation, and 3xFlag-2xStrep-TNF (0.5 μg/mL/sample) was added to the untreated samples. Subsequently, the lysates were subjected to anti-Flag immunoprecipitation using M2 antibody coupled sepharose beads (Sigma, A2220-5ML) for 16 h. For FADD immunoprecipitation, transformed MEFs were treated with 20 μM zVAD-fmk (Abcam, ab120487) in the presence or absence of 100 ng/mL 6xHis-TNF for 3 h. Cells were lysed as described above and FADD was immunoprecipitated using anti-FADD antibody (Santa Cruz, sc-5559) and protein G Sepharose Beads (GE healthcare, 17-0618-01) at 4°C for 4 h. For Sharpin immunoprecipitation, anti-Sharpin antibody (ProteinTech, 14626-1-AP) was used. For all immunoprecipitations, the beads were washed three times with lysis buffer. Proteins were eluted in 50 μL of LDS buffer (NuPAGE, Invitrogen) containing 50 mM DTT. Samples were analysed by Western blotting.
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