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5 protocols using goat anti nephrin

1

Immunofluorescent Microscopy of Kidney Samples

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Immunofluorescent microscopy was performed as discussed in our previous publications [23 (link), 24 (link)]. Briefly, the kidneys were perfused in situ and then fixed with fresh 4% PFA and stored at −80°C. Subsequently, paraffin sections (4 µm) were prepared and de-paraffinized in xylene and re-hydrated through graded concentrations of alcohol. Epitope retrieval was carried out by heating the samples at 98 °C for 2 h in Retrieveall-1 (Sign et Laboratories, Inc.). Subsequently, cooled samples were permeabilized with 0.3% Triton X-100 for 10 min, and were blocked with 2% BSA in 0.1% Triton X-100 for 1h at room temperature. Sections were then incubated with primary antibodies overnight at 4°C, followed by Alexa Fluo r secondary antibodies (Invitrogen, 1:800), donkey anti-rabbit IgG Alexa Fluor 568 or donkey anti-goat lgG Alexa Fluor 488, for 1 hour at room temperature. Primary antibodies included rabbit anti-Grem2 (Novus Biologicals, NBP1–31150, 1:100), goat anti-nephrin (R&D system, 1:100). All antibodies were diluted in 0.1% Triton X-100, 2% BSA in PBS. Cells were then counterstained with Hoechst33342 (Sigma-Aldrich) to identify nuclei. Morphological changes were visualized and captured with a ZEISS microscope (Carl Zeiss MicoImaging GmbH, Jena, Germany) equipped with a digital imaging system.
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2

Investigating Adriamycin-Induced Kidney Injury

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Adriamycin was obtained from Sigma Aldrich (St. Luis, MO). FR167653, p38α MAPK inhibitor, was kindly provided by Astellas Pharma Inc. (Tokyo, Japan). Primary antibodies used for immunohistochemical studies and Western blotting were mouse anti-NPR-C (1:100, sc-515449; SantaCruz, Dallas, TX), goat anti-nephrin (1:100, AF3159; R&D Systems, Minneapolis, MN), rabbit anti-monocyte chemotactic protein-1 (1:100, ab25124; Abcam, Cambridge, UK), rabbit anti-phospho-p38 MAPK (1:1000, #9211; Cell Signaling Technology, Boston, MA), mouse anti-desmin (1:150, M0760; DAKO, Tokyo, Japan), mouse anti-β actin (1:1000, A5411; Sigma-Aldrich), and rat anti-MAC-2 (1:100, CL8942F; Cedarlane, CA).
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3

Podocyte Stress Signaling Pathways

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Aldosterone was obtained from Sigma Aldrich (St. Louis, MO). FR167653, p38α MAP Kinase inhibitor, was kindly provided by Astellas Pharma Inc. (Tokyo, Japan). Primary antibodies used for immunohistochemical studies and Western blotting were goat anti-nephrin (R&D Systems, Minneapolis, MN), rabbit anti-podocin (Sigma Aldrich), rabbit anti-phospho-p38 MAPK (Cell Signaling Technology, Boston, MA), rabbit total p38 MAPK (Cell Signaling Technology), rabbit anti-WT1 (Santa Cruz, Dallas, TX), and rabbit anti-p53 (Vector Laboratories, Burlingame, CA), rabbit anti-phospho-MKP-1 (Cell Signaling Technology), rabbit anti-phospho-MKK3 (Cell Signaling Technology), and mouse anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH; Santa Cruz) antibodies. pRc/RSV Flag MKK350 (link) and pRc/RSV Flag MKK3 (glu)51 (link) were gifts from Professor Roger Davis (Addgene plasmid #14671 and #14670, respectively).
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4

Podocyte Mitochondrial and Foot Process Analysis

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All animal experiments were performed in accordance with the Animal Experimentation Committee of Kyoto University and Tanabe R&D Service CO Ltd (Osaka, Japan). Mitochondria and foot process morphology in mouse podocytes were ultrastructurally analyzed by transmission electron microscopy (Hitachi S4700, Tokyo, Japan) at a magnification of ×4000. At least total 280 mitochondria and 160 foot processes were examined in three 20-week-old male C57Bl6 wild type mice and three 20-week-old male eNOS knockout mice (BKS.129P2(Cg)-Nos3/J) (Jackson Laboratories, Bar Harbor, ME, USA). The longest mitochondrial diameter and the shortest FP length were measured. For immunofluorescence for nephrin and PFK-L, the tissue samples were incubated with 10 mM citrate buffer (pH 6.0) at 50–90 °C for 30 min for retrievals and subsequently incubated overnight at 4 °C with primary antibodies, including goat anti-Nephrin (R&D Systems, Minneapolis, MN) and rabbit anti-PFKL. Then, sections were incubated with Alexa Fluor 488-labeled anti-rabbit IgG (Invitrogen) and Alexa Fluor 568-labeled anti-goat IgG (Invitrogen) for 1 h at room temperature, mounted with Vectashield anti-fade mounting medium (Vector Labs, Burlingame, CA) and finally examined by confocal microscopy (Leica TCS SP8; Leica Microsystems, Tokyo, Japan).
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5

Double-Immunofluorescence Staining of Podocytes

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Double-immunofluorescence staining was performed using cultured podocytes grown on collagen-coated glass cover slips and frozen mouse kidney sections as described previously [37 (link), 38 (link)]. Briefly, after fixation the cells were incubated with goat anti-nephrin (1:200; R&D, Minneapolis, MN, USA) and rabbit anti-pannexin-1 (1:200) overnight at 4°C. Then, Alexa 488-labeled donkey anti-goat secondary antibody (1:200; Life Technologies, CA, USA) and Alexa 555-labeled donkey anti-rabbit secondary antibody (1:200; Life Technologies, CA, USA) were added to the cell slides and incubated for 1 hour at room temperature. Frozen mouse kidney slides were fixed in acetone, blocked, and then incubated with goat anti-nephrin and rabbit anti-pannexin-1 overnight at 4°C. Then, Alexa 488-labeled donkey anti-goat secondary antibody and Alexa 555-labeled donkey anti-rabbit secondary antibody were added to the cell slides and incubated for 1 hour at room temperature. Slides were then washed, mounted, and observed using a confocal laser scanning microscope (Fluoview FV1000, Olympus, Japan).
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