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Biotek synergy 2 plate reader

Manufactured by Agilent Technologies
Sourced in United States

The BioTek Synergy 2 plate reader is a multi-mode microplate reader designed for a variety of absorbance, fluorescence, and luminescence-based applications. It features a high-performance monochromator-based optical system and uses advanced detection technologies to provide accurate and reliable measurements.

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16 protocols using biotek synergy 2 plate reader

1

SARS-CoV-2 NP Protein Antibody ELISA

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pRSF-duet-P18NP was transformed into BL21 competent bacterial cells. After overnight IPTG induction (0.1 mM) at 16°C, the cells were lysed and the NP protein was purified on a HisTrap immobilized metal affinity chromatography (IMAC) column (Cytiva, USA). The Nunc MaxiSorp plates (Thermo-fisher, USA) were coated with 200 ng of recombinant NP proteins overnight at 4°C in coating buffer (50 mM Carbonate-Bicarbonate buffer, pH 9.5). Plates were washed once with wash buffer (PBS + 0.2% Tween20) and blocked for 2 h at ambient temperature with blocking buffer (PBS + 4.0% dry milk) followed by three more washes. Serum samples were serially diluted in diluting buffer (PBS + 0.05% Tween20), added to plates, and incubated for 1 h. Following three washes, samples were incubated with goat anti-guinea pig IgG HRP secondary antibody (Sigma, USA) at 1:10,000 dilution for 1 h. Following four washes, samples were incubated with the TMB substrate (Thermo-fisher, USA) for 15 min in the dark, then a stop solution (0.16M H2SO4) was added and optical density (OD) values were read at 450 nm using a Biotek Synergy 2 plate reader (Biotek, USA). The IgG antibody endpoint titer was defined as the highest dilution giving OD450 above the cutoff value, which was determined by average plus four times standard deviation of secondary-antibody-only controls.
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2

Monitoring HYP Uptake in Breast Cancer Cells

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Fluorescence spectroscopy was employed to monitor HYP loading in MCF7 and MDA-MB-231 cells. Cells were seeded in 96 well plates. The designated groups were treated with 100 μM BSO overnight. Subsequently cells were treated with vehicle, HYP, BSO+HYP, NAC+HYP and BSO+NAC+HYP for 4 h. All cells were consequently washed twice and all cell groups were placed in complete media. The fluorescence was read in a Biotek synergy 2 platereader (BioTek Instruments, Inc.) using a 530±25 nm bandpass excitation filter and a 590±35 nm bandpass emission filter. Empty wells incubated with HYP and washed twice were used as blanks and subtracted from all data groups.
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3

Dexamethasone Permeability in Biofilm-Coated Lenses

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Biofilm-coated and control lenses composed of lotrafilcon A and methafilcon were placed concave side up in a 6-well tissue culture dish containing 0.45 μm filter inserts (Costar # 3412) (Figure 1A and B) with 1 ml of sterile phosphate buffered saline (PBS) below the insert. Forty microliters of 6 mM dexamethasone (Sigma product number D4902 dissolved in DMSO) was placed in the concave side of the biofilm and non-biofilm lenses and incubated overnight at room temperature. An aliquot (20 microliters) of the PBS solution below the insert was collected and absorbance was read at 239 nm the absorbance maxima for dexamethasone previously reported by 32 (link) and verified under our experimental conditions using a Biotek Synergy 2 plate reader (Biotek). Dexamethasone concentration was determined using a standard curve. Experiments were also conducted with 40 μl of 6 mM fluorescein-conjugated dexamethasone (Sigma product number D1383 dissolved in DMSO) on lotrafilcon A (Air Optix® Night and Day™ Aqua) lenses (+/- biofilm) and fluorescence was measured at 485 nm excitation and 515 nm emission with a Biotek Synergy 2 plate reader. Experiments were conducted in triplicate on at least two different days yielding similar results. Data was analyzed using Prism Software (GraphPad) using a two-tailed Student's T-test with significance set to P < 0.05.
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4

Cellular Reactive Oxygen Species Measurement

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ROS was detected using a 2′-7′-dichlorodihydrofluorescein diacetate (DCFDA) - cellular ROS detection assay kit from Abcam (Cambridge, MA). Briefly, NCM460 and SW620 cells (2.5 × 104/100 μl) were plated in Costar 96-well black solid-bottom culture plates (Corning, Corning, NY) and incubated overnight at 37°C. Complete media was replaced with starvation media (M3:BaseA (InCell Corp.) +FBS (0.5%), +PenSptrep (0.5%)) then the cells were incubated overnight at 37°C. Cell were washed with 1 x PBS and incubated with 25 μM DCFDA for 45 m at 37°C. After incubation, 100 μl/well of the various test compounds (Hb(n) or Hb) at various concentrations were added to the wells. Appropriate blanks (with, without DCFDA) were used to correct for background autofluorescence of controls, and cells treated with 50 μM tert-butyl hydroperoxide and DCFDA were used as positive controls. Fluorescence was measured at 1 h intervals for up to 24 h (data shown represents 0 h, 2 h, 6 h, 12 h, and 24 h only) in a BioTek Synergy 2 plate reader (BioTek Instruments) using excitation and emission wavelengths of 485 nm and 535 nm. Fluorescence is presented as a percent of control values by the formula [Ftexp/Ftcontrol], where Ftexp = fluorescence at any time after treatment in a given well and Ftcontrol = mean fluorescence of the respective untreated control replicates.
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5

MTT Assay for Cell Proliferation

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100μl HEK 293T cells were seeded on cell culture treated 96 well-plate (in the concentration of from 100.000 cells/ml serial dilution to 82 cells/ml and incubated at 37C° for 24 hours Then, medium discarded and cells were washed with PBS 2 times to remove non-attached cells. 90μl fresh media added along with 10μl mSPs in the concentration of 10x and 1000x and incubated for 24h or 48h. Promega CellTiter 96 Nonradioactive Cell Proliferation Assay (MTT) was conducted as described in the protocol. Shortly, 15μl dye solution added to cells and incubated for 4 h, then 100μl stop/solubilization solution is added, and then sealed and incubated at 37C° overnight to allow complete formazan product solubilization. Tetrazolium salt in the dye solution converted into the formazan by living cells, and the solubilization solution solubilizes the formazan product. The next day, plate reader (BioTek Synergy 2 Plate Reader, BioTek Instruments, Inc., Winooski, Vermont, USA) utilized to record absorbance at 570nm. As a blank absorbance of mSP solutions in media used and subtracted from all samples. All experiments were repeated three times. The results were expressed as mean ± SD (n = 5).
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6

Proteomic Analysis of Honey Bee Heads

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Proteomic sample preparations and analyses were performed using the ProteaseMax reagent and protocols (Promega, Madison, WI, USA). At the end of three weeks, for each replicate of the experimental groups (control and S1–S5), the heads of five honey bees were pooled. Thus, a total of 15 honey bee heads were analyzed from each experimental group (five from each replicate). The pooled samples of each replicate cage were homogenized in 2 mL of 50 mM ammonium bicarbonate buffer with 0.04% ProteaseMax reagent and one 3-mm tungsten carbide bead (Qiagen, USA), using a Tissue Lyser II (Qiagen, Germantown, MD, USA; two rounds of 1.5 min at 30 oscillations s−1). Homogenized samples were then centrifuged at 20,000× g for 30 min at 4 °C (Eppendorf model 5430R, Eppendorf, Enfield, CT, USA) to pellet the debris. Next, a BCA assay (Pierce Biotech BCA Assay Kit, Thermo Scientific, Waltham, MA, USA) was used to quantify protein concentration of the supernatants by measuring absorbance at 562 nm on a BioTek Synergy 2 plate reader (BioTek Instruments, Winooski, VT, USA). The remaining volume of supernatant was submitted to the Mass Spectrometry Center at Oregon State University where nano LC-MS was performed.
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7

Curcumin Modulates Endothelial Permeability

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As for monocyte transendothelial migration assay, confluent cultured HUVECs loaded onto Coning Transwell filters were made quiescent for 24 hours in medium with 0.2% FBS before being exposed to 0.5 µM or 1 µM curcumin or vehicle (0.02% DMSO) for 3 hours, followed by stimulation with 1 ng/ml of TNF-α for 4 hours. Permeability of the endothelium was evaluated by passage of FITCdextran at 40 kDa through endothelial monolayer. One hundred microliters of FITC-dextran at 40 kDa (2 mg/mL) was added to the upper chamber and allowed to equilibrate for 20 minutes, after which FITC fluorescence (excitation 488 nm; emission 520 nm) in the lower chamber was measured using a Biotek synergy 2 plate reader (BioTek, France). Four independent experiments were performed.
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8

Luciferase Reporter Assay in HEK293 Cells

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HEK293 or HEK293T cells were seeded into 24 wells at 2.4 × 105 and 1.6 × 105 per well, respectively. The stable Flp-In 293 T-REx cell lines were seeded at 2.4 × 105. Cells were co-transfected the next day with Fugene 6 and various combinations of reporter gene and/or expression constructs at a total DNA concentration of 1 μg/well following the manufacturer’s protocol (Roche Diagnostics). After 48 h cells were harvested and lysed with 100 μl/well of Passive Lysis Buffer following manufacturer’s instructions for the Luciferase Reporter Assay System (Promega). Luciferase activity was measured in 10 μl of cell lysate using a Biotek Synergy II plate reader (Biotek Instruments, Inc.). Luciferase activity from mock transfected.
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9

miRNA Expression Detection Protocol

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For the detection of miRNA expression, RNA was extracted from lungs, MLE12 cells, human tracheal aspirate (TA) pellets and primary T2AECs using miRNeasy mini kit (Qiagen, Valencia, CA). RNA concentration and quality was determined using a Biotek synergy II plate reader (Biotek, Winooski, VT). Across all samples the mean 260/280 ratio was greater than 2.0. cDNA was synthesized using a miScript II RT Kit (Qiagen, Valencia, CA). The StepOnePlus platform (Applied Biosystems) was used for all PCR, done in triplicate using miScript primer assay (Qiagen). Changes in expression were calculated by the change in threshold (ΔΔCT) method with RNU6 as the endogenous control for miRNA analysis and ß-actin (ACTB) for primary miRNA for gene-expression analysis. The miScript primer assay (Qiagen) IDs are mouse MS00001428 (miR-34a), Human MS00003318 (miR-34a), MS00033740 (RNU6), Mouse MP00005614 (Pre-miR-34a) and Mouse QT01136772 (ACTB).
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10

Biofilm Quantification in Microtiter Plates

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For biofilm growth, an overnight culture of HG003 was diluted at 1 in 1,000 into fresh medium (typically TSB supplemented with 0.5% glucose [TSBG] or as specified in the text) and 200 µl was divided into aliquots and introduced into a Nunc MicroWell 96-well microplate (catalog. no. 167008; Thermo/Fisher Scientific). The starting OD600 was recorded using a Bio-Tek Synergy II plate reader (BioTek Instruments). Plates were incubated statically at 37°C for 24 h. The medium in each well was removed to a new 96-well plate. The biofilms were washed twice with 100 µl phosphate-buffered saline (PBS) (pH 7.5), and the two washes were amalgamated into a new 96-well microtiter plate. The biofilms were resuspended in 200 µl PBS. The OD600 of each fraction was recorded using a Bio-Tek Synergy II plate reader. The starting OD600 was subtracted from that for each medium sample, and the absorbance of PBS was subtracted from the values for the wash and biofilm samples. Results from replicate wells (≥4) were averaged, and a standard deviation was calculated. Proteinase K (Omega Bio-Tek) was used at 0.1 mg/ml. DNase I (Qiagen) was used at 28 U/ml.
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