The largest database of trusted experimental protocols

7 protocols using caspase 9

1

Apoptosis Evaluation of HUCMSCs with Calcium Hydroxide

Check if the same lab product or an alternative is used in the 5 most similar protocols
HUCMSCs were assigned into 9 groups of control and 9 groups of calcium hydroxide treatment, with allocation for 1, 3, and 7 days of observations. Each group consisted of six wells of M24 plate (Iwaki Asahi, Japan). Every M24 plate well was seeded with 250.000 HUCMSCs in 1 mL media. HUCMSCs in the treatment groups were grown in minimum essential medium (MEM) alpha containing 0.1 microgram/mL calcium hydroxide, and the control groups were grown in MEM alpha medium only without the addition of calcium hydroxide. The groups were cultured in incubator at 37°C and 5% CO2 and observed for 1, 3, and 7 days.
Apoptosis reaction of HUCMSCs was investigated through the expressions of apoptotic protease-activating factor-1 (Bioss Antibodies, USA), Caspase-3 (Bioss Antibodies, USA), and Caspase-9 (Bioss Antibodies, USA). The investigation was done following the manufacturer’s instructions Other previous study used flow cytometric analysis for assessments.12 (link) In this research APAF-1, Caspase-3, and Caspase-9 expressions were assessed for apoptosis using polyclonal antibody with fluorescence isothiocyanate (FITC) label (Bioss Antibodies, USA). Observation of the results was done with fluorescence microscope (Olympus, Japan) with imaging system at 100x magnification and processed in ImageJ software for fluorescence quantification (National Institute of Health, USA).13 (link)
+ Open protocol
+ Expand
2

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total protein was extracted using a RIPA lysis buffer (Beyotime). The cytosolic protein, mitochondrial protein and nuclear protein were extracted respectively using a mitochondria and nuclear protein extraction kit (Beyotime) according to the manufacturer's instructions. Equal amounts of proteins were loaded onto SDS-polyacrylamide gels and transferred onto a nitrocellulose membrane. The membrane was blocked with 5% non- fat milk powder in TBST for 1 h and incubated with primary antibodies against Bmi1 (1:500) (Santa Cruz), Bcl-2 (1:500) (CST), Bax (1: 1000) (CST), c-Myc (1:400) (Santa Cruz), Cyclin D1 (1:500) (CST), survivin (1:400) (Santa Cruz), Bcl-xL (1:400) (Santa Cruz), caspase 3 (1:1000) (CST), caspase 9 (1:300) (Bioss), COX IV (1:1000) (Abbkine). PARP-1 (1:1000), cytochrome-C (1:1000), Histone H3 (1:2000), phosphorylated IKKα/β (1:1000), IKKβ (1:1000), phosphorylated IκBα (1:1000), IκBα (1:1000), NF-κB/p65 (1:1000), GAPDH (1:1000), β-actin (1:1000) were purchased from CST. After washing with TBST, the membrane was incubated with secondary, horseradish peroxidase-coupled antibodies (Pierce) and visualized using enhanced chemiluminescence (Pierce). GAPDH or β-actin was used as internal controls.
+ Open protocol
+ Expand
3

Apoptosis and Cell Cycle Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were treated with the above concentrations of FB1 for 48 h, then washed three times with ice-cold PBS. The cells were then lysed with RIPA buffer (Solarbio) containing a protease inhibitor mixture (Solarbio, Beijing, China) and protein phosphatase inhibitor (Solarbio). The total protein concentrations were determined using a Bradford protein kit (Tiandz, Beijing, China). The total proteins were resolved by electrophoresis and transferred to poly(vinylidene fluoride) membranes for 80 min at 200 mA. PVDF membranes were incubated with primary antibodies caspase3 (Beijing Biosynthesis Biotechnology Co., Ltd. Beijing, China), caspase9 (Bioss), CDK2 (Bioss), CDK4 (Bioss, Beijing, China), cyclinD1 (immunoway, Plano, TX 75024, USA), cyclinE1 (immunoway), Bax (Proteintech Group, Inc., Wuhan, China), and GAPDH (Servicebio, Wuhan, China) overnight at 4 °C. Then, the membrane was washed three times with Tris-buffered saline tween (TBST) for 15 min. Secondary antibody (IgG, Vazyme) was used to incubate the membranes for 1 h at 4 °C. Finally, band density was quantified using the Image Lab 5.0 on the ChemiDOC XRS + system (Bio-Rad, Hercules, CA, USA).
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Cartilage Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue specimens were fixed in 4% paraformaldehyde, decalcified, and embedded in paraffin. Serial 4 μm sections were obtained. The tissue sections were dewaxed, hydrated, and treated with pepsin, whereupon they were washed with PBS, treated with peroxidase blocker, and washed again with PBS. The sections were incubated with SIRT1, VEGF, PTEN, AKT, Caspase 9, MMP13, and type II collagen antibodies (Bioss, Beijing, China). They were then washed with PBS, incubated with the secondary antibody, and then treated with fresh Diaminobenzidine (DAB) solution. Tissues that were found to be immunohistochemically positive for SIRT1, VEGF, PTEN, AKT, Caspase 9, MMP13, and type II collagen proteins were stained brown under a microscope. The area was photographed under the positive fluorescence microscope, and an area of the same size was intercepted. Image Pro-Plus 6.0 was used to calculate the size of the brown area.
+ Open protocol
+ Expand
5

Protein Expression Analysis in Lysed Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The treated cells were lysed with RIPA (Beyotime, Shanghai, China) containing protease inhibitors. The protein concentration was determined with the BCA protein quantification kit (Beyotime, China). After that, the protein was separated by SDS-PAGE gel electrophoresis and transferred to a PVDF membrane. PVDF membranes were closed with 5% skim milk powder for 2 h at room temperature, and the primary antibodies CD206 (1:1000; CST), CD163 (1:1000; Abcam), CD68 (1:1000; Abcam), CD86 (1:1000; Bioss), CD63 (1:500; Abcam), CD9 (1:500; Abcam), Caspase-3 (1:750; Bioss), Caspase-9 (1:750; Bioss), MMP-2 (1:1000; HUABIO), MMP-9 (1:1000; HUABIO), E-cadherin (1:1000; Abcam), Vimentin (1:1000; Abcam), and PTEN (1:1000; Abcam) were incubated at 4 °C overnight. After incubation of the secondary antibody for 1 h at room temperature, ECL reagent (Beyotime, Shanghai, China) was added and the bands were observed by Bio-Rad GelDoc 2000.
+ Open protocol
+ Expand
6

Hepatocyte Protein Extraction and Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hepatocyte protein was isolated using a protein extraction kit (BestBio Biotech Co. Ltd., Shanghai, China), and the BCA protein assay kit (BestBio) was used to determine the concentration of protein samples.
Western blotting was performed with the method described by [47] with the following primary antibodies: anti-PPARα (Abcam, Cambridge, UK), anti-PCNA (ABclonal Technology, Wuhan, China), anti-CDK2 (Zen-Bio, Chengdu, Chin), anti-caspase-3 and caspase-8 (Abcam), and caspase-9 (Bioss, Beijing, China), anti-PI3K [Cell Signaling Technology (CST), USA], anti-p-PI3K (CST), anti-AKT and p-AKT (CST), and anti-Gsk3β and p-Gsk3-β (ABclonal). Goat anti-mouse and goat anti-rabbit secondary antibodies (Zen-Bio) β-Tubulin (Zen-Bio) was used as a reference.
+ Open protocol
+ Expand
7

Protective Effects of HDAX on ER Stress

Check if the same lab product or an alternative is used in the 5 most similar protocols
HDAX were mainly composed of Coptidis Rhizoma, Radix Rehmanniae, Radix Puerariae, Radix Ophiopogonis, Eriobotryae Folium, and Radix Notoginseng, which were purchased from Anhui Provincial Hospital of Chinese Medicine. Notoginsenoside R1, ginsenoside Rg1, puerarin, acteoside, berberine, coptisine, and palmatine hydrochloride were purchased from Shanghai yuanye Bio-Technology Co., Ltd (Shanghai, China). 4-phenylbutyric acid (4-PBA) was purchased from Sigma-Aldrich (St. Louis, MO, USA). The primary antibody of GRP78, CHOP was purchased from A nity Bioscience (1:1300, USA); Caspase-12, Caspase-9, Caspase-3 were obtained from Bioss (1:1000, Beijing, China); Bax, Bcl-2 was provided by Bioworld (1:1000, Nanjing, China).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!