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Dii lipophilic carbocyanine dye

Manufactured by Merck Group

DiI is a lipophilic carbocyanine dye. It is a fluorescent probe used to label the cell membrane and study cell-cell interactions.

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2 protocols using dii lipophilic carbocyanine dye

1

Neuronal Activity Recording in DLS and S1

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Animals were anesthetized with urethane (1 g/kg) and mounted on the stereotaxic frame (Fig. 4); supplementary doses (0.15 g/kg) were given during the recording when necessary. Silicon probe–based recordings were performed through a craniotomy (1.4 mm by 2.5 mm) centered at 0.6 mm anterior and 3.7 mm lateral to bregma. All the stereotaxic coordinates were selected on the basis of previous reports focused on the DLS forelimb region (8 (link)). Histological confirmation of silicon probe position in the brain was achieved by applying DiI lipophilic carbocyanine dye (1%; Sigma-Aldrich) to the back of the probes before insertion. For optogenetic experiments, an optical fiber (200 mm) was directed to M2 (coordinates: AP, 3.5; ML, 1.9; DV, 1.3) or S1 (coordinates: AP, 0.6; ML, 3.6; DV, 1.3), contralaterally to the recording site. The silicon probe was slowly lowered to record neuronal activity from the S1 forelimb region (0.8- to 1.6-mm depth) and until the DLS (3.5- to 4.5-mm depth). For each animal, we performed recordings in 2 to 3 and 3 to 5 depths (at least 250 μm between each depth) in the S1 and DLS, respectively. Immediately after the experiments, animals were injected with a lethal dose of pentobarbital and transcardially perfused. The brains were extracted and processed for histology.
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2

Perfusion and Tissue Sectioning Protocol

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Rats were anesthetized with an overdose of sodium pentobarbital (150 mg/kg), then perfused intracardially with PBS 1x and paraformaldehyde at 4%. The brain was removed and put in a 10% sucrose solution for 24 h, followed by sequential increases in sucrose concentration until reaching 30% in a 72-h period. The brain was then sliced coronally (50 μm thick) and stained with cresyl violet. For histological confirmation of electrode location in the brain, the electrodes were covered with DiI lipophilic carbocyanine dye (1%; Sigma-Aldrich) allowing the observation of the fluorescent track left by the electrodes.
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