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Gel purification kit

Manufactured by GE Healthcare

The Gel purification kit is a laboratory equipment designed to extract and purify DNA or RNA fragments from agarose gels. It provides a simple and efficient method to recover specific DNA or RNA molecules of interest after electrophoresis separation.

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2 protocols using gel purification kit

1

Acquisition of EGFR Inhibitor Resistance

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Ba/F3-EGFR-del19/C797S, Ba/F3-EGFR-del19, and L858R/T790M/C797S cells (1 × 106 cells/ml) were exposed to 100 µg/ml N-ethyl-N-nitrosourea (ENU) (Sigma) for 24 h. After ENU treatment, the cells were washed with PBS and cultured on D-10 for 24 h. The cells were seeded at a density of 1 × 105 cells/well in 96-well plates for 24 h and cultured with brigatinib (300, 600, 800, or 1000 nM), a combination of brigatinib (300, 600, 800, or 1000 nM), 10 µg/ml panitumumab, or gefitinib (300, 600, or 1000 nM) for 3 weeks. Drug-resistant cells were picked and expanded. DNA extracts were prepared from these clones by lysing them with proteinase K buffer, and the entire kinase domain of EGFR was amplified using KOD plus neo (TOYOBO). The PCR products were purified using a gel purification kit (GE Healthcare) and analyzed using standard Sanger sequencing.
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2

ROS1 Kinase Domain Sequencing

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Genomic DNA was prepared by lysing the cells with proteinase K buffer, which was heat inactivated at 95°C for 5 min. Then, the temperature was gradually decreased by 2°C/min. For sequence analysis, a DNA fragment covering the entire kinase domain of ROS1 was amplified using KOD Plus (TOYOBO). The PCR products were then purified with a gel purification kit (GE healthcare) and sequenced using standard Sanger sequencing.
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