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6 protocols using plenti cmv to puro dest

1

Molecular Cloning and Manipulation of Androgen Receptor

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FOXA1 siRNA (sense 5′-GAGAGAAAAAAUCAACAGC-3′; antisense 5′-GCUGUUGAUUUUUUCUCUC-3′)14 (link),20 (link), AR on-target plus smart pool (L-003400-00-0020), and control siRNA Luciferase GL2 Duplex (D-001100-01-20) were synthesized by Dharmacon. The control and pGIPZ lentiviral shRNAmir targeting FOXA1 (Clone ID# V2LHS_16780) were purchased from Open Biosystems. C-terminal 3×HA-tagged full-length FOXA1 was cloned into a Tet-On inducible lentiviral vector that was kindly provided by Professor Junjie Chen (M.D. Anderson Cancer Center). The full-length (wild-type) and truncated AR (Q640X) were amplified from pcDNA3.1-ARfl plasmid24 (link) and cloned into the pCR8/GW/TOPO entry vector (Invitrogen). The pCR8-AR C562S and G568W mutants were generated from pCR8-AR wildtype using QuikChange® II Site-Directed Mutagenesis Kit (Agilent Technologies, Santa Clara, CA). Lentiviral constructs were generated by LR recombination between pCR8-AR constructs and pLenti CMV/TO Puro DEST (Addgene plasmid 17293). Details regarding cloning primers and plasmid construction were provided in Supplementary Table 1 and Supplementary Table 2.
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2

Molecular Cloning and Manipulation of Androgen Receptor

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FOXA1 siRNA (sense 5′-GAGAGAAAAAAUCAACAGC-3′; antisense 5′-GCUGUUGAUUUUUUCUCUC-3′)14 (link),20 (link), AR on-target plus smart pool (L-003400-00-0020), and control siRNA Luciferase GL2 Duplex (D-001100-01-20) were synthesized by Dharmacon. The control and pGIPZ lentiviral shRNAmir targeting FOXA1 (Clone ID# V2LHS_16780) were purchased from Open Biosystems. C-terminal 3×HA-tagged full-length FOXA1 was cloned into a Tet-On inducible lentiviral vector that was kindly provided by Professor Junjie Chen (M.D. Anderson Cancer Center). The full-length (wild-type) and truncated AR (Q640X) were amplified from pcDNA3.1-ARfl plasmid24 (link) and cloned into the pCR8/GW/TOPO entry vector (Invitrogen). The pCR8-AR C562S and G568W mutants were generated from pCR8-AR wildtype using QuikChange® II Site-Directed Mutagenesis Kit (Agilent Technologies, Santa Clara, CA). Lentiviral constructs were generated by LR recombination between pCR8-AR constructs and pLenti CMV/TO Puro DEST (Addgene plasmid 17293). Details regarding cloning primers and plasmid construction were provided in Supplementary Table 1 and Supplementary Table 2.
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3

Generation of Inducible SOD1 Lentiviral Vectors

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The plasmids pcDNA3-SOD1(WT) and pcDNA3-SOD1(G93A) were purchased from Addgene (Cambridge, United States) and used as template to amplify by PCR the respective cDNA. Briefly, hSOD1 cDNAs were amplified with AccuPrime DNA polymerase (Invitrogen) and cloned in SgfI and MluI sites of pCMV6-AN-His-HA plasmid (OriGene) to generate a vector, expressing the human SOD1 gene tagged at the N-terminus with polyhistidine (His) tag and HA. For lentiviruses preparation, the His-HA tagged genes were excised from pCMV6-HIS-HA plasmids and subcloned into the BamHI and XhoI sites of the vector pENTR1A (w48-1, Addgene). The resulting vectors were then recombined with pLenti CMV/TO Puro DEST (670-1, Addgene) using Gateway LR-Clonase (Life Technologies) to get the lentiviral vectors expressing hSODWT and its mutant under the control of a doxycycline-inducible promoter. Lentiviruses were then prepared in accordance with the protocols detailed by Campeau et al. (2009) (link), meeting Biosafety Level 2 (BSL-2) requirements.
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4

Lentiviral Transduction of RelB Gene

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RelB (NM_006509, from OriGene, Rockville, MD, USA) was inserted in pENTR/D-TOPO (Invitrogen, NY, USA). The generated pENTR-RelB vector was recombined in the 670–1 vector (pLenti CMV/TO Puro DEST, Addgene 17293) [20 (link)] using recombination-cloning technology from Invitrogen. The eGFP was used for control cell population and has previously been described elsewhere [21 (link),22 (link)]. Lentiviruses were produced by co-transfecting vectors containing RelB or eGFP cDNA and using the ViraPower Lentiviral Packaging Mix (Invitrogen, Carlsbad, CA) in the 293FT packaging cell line. The lentiviral contructs were harvested from cell supernatants, concentrated by ultracentrifugation (20,000 rpm) and stored at −80˚C until use. For viral infection, cells were plated in 6-well plates containing 2 ml of culture media and cultured until 50-70% confluence. Infections were performed in RPMI 1640 media containing 5 μg/ml polybrene (Sigma, St. Louis, MO). Culture media was changed 16 hrs after the infection and puromycin selection was performed two days post-infection.
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5

Recombinant Adissp Purification and Application

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To increase the yield and facilitate the purification of secreted Adissp, we added a signal peptide at the N-terminus of Adissp and a 6×His tag at its C-terminus using pHL-sec vector (Addgene, #99845)45 (link). The resulting DNA fragment was cloned into pENTR1A vector (Addgene, #17398). Lentiviral construct was generated via recombination of pENTR1A-Adissp into pLenti CMV/TO Puro DEST (Addgene, #17293), and lentiviruses were produced by co-transfection along with plasmids pLP1, pLP2, and pVSVG into HEK293 cells. HEK293 cells were infected with lentiviruses and Adissp expressing stable cells were selected with puromycin. Serum-free medium from stable cells was collected, and incubated with Ni-NTA Agarose (QIAGEN, #30210) at 4 °C for 2 h. The samples were loaded into Poly-Prep chromatography columns (Bio-Rad, # 7311550). The columns were washed with washing buffer (PBS containing 5 mM imidazole (Sigma, #I5513). Adissp protein was eluted with elution buffer (PBS containing 250 mM imidazole), concentrated and then buffered in PBS. Endotoxin level (0.08 EU/mL) was measured using a commercial kit (Thermo Scientific, #88282). Purified Adissp protein was used to treat adipocytes, or intravenously inject into 3-month-old C57BL/6J male mice (1 mg/kg body weight) in a total volume of 150 μL. PBS was used as vehicle control. Adissp protein was used within 1 week after purification.
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6

Lentiviral expression of Ras mutants

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pENTR4-V5 (Addgene, Watertown, MA, USA, #17425), pLenti CMV/TO Puro Empty (Addgene #17482), and pLenti CMV/TO Puro DEST (Addgene #17293) were gifts from Eric Campeau & Paul Kaufman. pBabe-KRas-GV (Addgene #9052) was a gift from William Hahn. pCMV-VSV-G (Addgene #8454) and pCMV-dR8.2 dvpr (Addgene #8455) were gifts from Bob Weinberg. Wild-type (WT) and K-Ras-GD mutants were generated from pBabe-K-Ras by site-direct mutagenesis. Ras constructs were subcloned into pENTR4-V5 and recombined into pLenti CMV/TO Puro DEST by clonase reaction.
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