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Mek inhibitor pd0325901

Manufactured by Cayman Chemical

PD0325901 is a potent and selective inhibitor of the MEK1/2 kinases. MEK1/2 are key components of the MAPK/ERK signaling pathway, which is involved in cell growth and proliferation. PD0325901 acts by inhibiting the catalytic activity of MEK1/2, thereby blocking downstream signaling through the MAPK/ERK pathway.

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5 protocols using mek inhibitor pd0325901

1

Mouse ESCs Differentiation Protocol

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Mouse embryonic stem cells (ESCs) were grown on gelatinized culture dishes in GMEM (Sigma) supplemented with 20% FBS (Gibco), 100U/mL penicillin-streptomycin (Gibco), 50 μM β-mercaptoethanol (Sigma), 1:100 GlutaMax, 1:100 non-essential amino acids (Gibco), 1mM sodium pyruvate (Gibco), 1:500 homemade leukaemia inhibitory factor (LIF), and 2i components; 3 μM GSK inhibitor CHIRON99021 (Cayman) and 1 μM MEK inhibitor PD0325901 (Cayman).The ESCs were spited and changed medium every 2 days. For EpiLC differentiation experiments, the dishes were coated with 16 μg/ml fibronectin for 2∼3 hours. 2 million ESCs were washed three times with PBS and seeded on the fibronectin coated dish in NDiff227 medium (Takara) supplemented with 20 ng/ml Activin A (Peprotech), 12 ng/ml bFGF (Gibco) and 1% Knockout Serum Replacement (KSR, Thermo) for 2 days. The EpiLC culture medium were changed daily. Human NTERA2 embryonic carcinoma cells (NT2) for ChIP-Rx spike-in were cultured in DMEM supplemented with 10% FBS (GIBCO), 100 U/mL penicillin (GIBCO) and 100U/mL streptomycin (GIBCO).
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2

Maintenance of Mouse Embryonic Stem Cells

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B6 mESCs used in this study were established and maintained in 2i/LIF medium as previously described (Pryzhkova and Jordan, 2016 (link)). 129S6/SvEvTac (129S6) mESCs (Taconic Biosciences) were obtained from JHU Transgenic Mouse Core. mESCs from TIR1 transgenic animals were established and maintained in 2i/LIF medium as described in (Pryzhkova and Jordan, 2016 (link)) with exception that mESCs were established from pooled embryos. Briefly, mESC culture medium included 1:1 mixture of DMEM/F12 (Gibco) and Neurobasal medium (Gibco) with 1% N2 supplement (Gibco) and 2% B27 supplement (Gibco), 1 mM L-Glutamine (Gibco), 1% MEM NEAA (Gibco), 50 μM β-mercaptoethanol (Gibco), 50 μg/ml BSA (Sigma), 10 ng/ml human LIF (PeproTech), 1 μM MEK inhibitor PD 0325901 (Cayman) and 3 μM GSK-3 inhibitor CHIR 99021 (Cayman). Cells were grown under feeder-free conditions on 0.2% gelatin (Sigma) and passaged every 3 days with TrypLE Express (Gibco). Essential reagent information is provided in Table S3.
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3

Maintenance of Mouse Embryonic Stem Cells

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B6 mESCs used in this study were established and maintained in 2i/LIF medium as previously described (Pryzhkova and Jordan, 2016 (link)). 129S6/SvEvTac (129S6) mESCs (Taconic Biosciences) were obtained from JHU Transgenic Mouse Core. mESCs from TIR1 transgenic animals were established and maintained in 2i/LIF medium as described in (Pryzhkova and Jordan, 2016 (link)) with exception that mESCs were established from pooled embryos. Briefly, mESC culture medium included 1:1 mixture of DMEM/F12 (Gibco) and Neurobasal medium (Gibco) with 1% N2 supplement (Gibco) and 2% B27 supplement (Gibco), 1 mM L-Glutamine (Gibco), 1% MEM NEAA (Gibco), 50 μM β-mercaptoethanol (Gibco), 50 μg/ml BSA (Sigma), 10 ng/ml human LIF (PeproTech), 1 μM MEK inhibitor PD 0325901 (Cayman) and 3 μM GSK-3 inhibitor CHIR 99021 (Cayman). Cells were grown under feeder-free conditions on 0.2% gelatin (Sigma) and passaged every 3 days with TrypLE Express (Gibco). Essential reagent information is provided in Table S3.
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4

Rat iPSC Generation and Characterization

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RiPSCs were derived from embryonic (E16) Fischer 344 rat fibroblasts (Charles Rivers) that were reprogrammed by retroviral expression of Oct4, Sox2, Klf4, CMyc and SV40 LT-Ag, similarly to previous studies (Liao et al., 2009 ; Liskovykh et al., 2011 (link); Makanga et al., 2015 (link)). RiPSCs were then trypsinized and maintained on a feeder layer of irradiated mouse embryonic fibroblasts (MEFs, Globalstem, Life Technologies) in stem cell medium. The riPSC medium consisted of 50% N2 medium (1% N2 supplement, 2.5% BSA, 1% penicillin/streptomycin, 0.3% β-Mercaptoethanol in DMEM/F12), 50% B27 medium (2% B27 supplement, 1% penicillin/streptomycin, 1% L-Glutamine in Neurobasal medium) supplemented with 3 μM GSK3αβ inhibitor CHIR99021 (Cayman chemical), 1 μM MEK inhibitor PD0325901 (Cayman chemical) and 10 μg/mL rat leukemia inhibitory factor (LIF) (Millipore) (Liskovykh et al., 2011 (link); Makanga et al., 2015 (link)). Cells were maintained in a humidified incubator at 37oC with 5% CO2 and the medium was changed daily. Colonies with typical iPSC morphology were passaged every 4–7 days by mechanical dissection and subsequent transfer to MEFs. The pluripotent state of riPSCs was assessed by quantitative real time PCR (qRT-PCR) analysis and immunofluorescence detection for the pluripotency markers Oct4, Octalat, Sox2, and Nanog (Supplementary Figure 1).
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5

Feeder Cell and N2B27 Medium Formulations

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Feeder Cell Medium: DMEM (41966, Thermo Fisher Scientific), 15% FBS (ES‐009‐B, Sigma‐Aldrich), penicillin–streptomycin (15140122, Thermo Fisher Scientific), GlutaMAX (35050061, Thermo Fisher Scientific), MEM non‐essential amino acids (11140035, Thermo Fisher Scientific), 1 mM sodium pyruvate (11360070, Thermo Fisher Scientific) and 100 μM β‐mercaptoethanol (31350‐010, Thermo Fisher Scientific). To maintain cells in pluripotency, 2i/LIF (1 mM MEK inhibitor PD0325901, 13034, Cayman Chemical; 3 mM GSK3 inhibitor CHIR99021, 13122, Cayman Chemical; and 10 ng/ml leukaemia inhibitory factor, LIF, A35933, Gibco) was added to the Feeder Cell medium to preserve naïve pluripotency. N2B27 Medium: 1:1 mix of DMEM F12 (21331‐020, Thermo Fisher Scientific) and neurobasal A (10888‐022, Thermo Fisher Scientific) supplemented with 2% v/v B27 (10889‐038, Thermo Fisher Scientific), 0.2% v/v N2 (17502048, Gibco), 100 μM β‐mercaptoethanol (31350‐010, Thermo Fisher Scientific), penicillin–streptomycin (15140122, Thermo Fisher Scientific) and GlutaMAX (35050061, Thermo Fisher Scientific).
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