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Ephus

Manufactured by MathWorks

Ephus is a data acquisition and analysis software package designed for neuroscience research. It provides tools for recording and analyzing electrophysiological data from multiple channels. Ephus supports a range of hardware interfaces and can be used with various experimental protocols.

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4 protocols using ephus

1

Electrophysiology Analysis of Synaptic Potentiation

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Slice electrophysiology experiments using N2AZ and scN2AZ were completed blind to the identity of the peptide. Experiments in ZnT3 KO and WT animals were completed blind to the genotype. Electrophysiology recordings in cortical cultures and DCN slices were obtained using Ephus software run in MATLAB 2012a (MathWorks). Cell parameters and response peaks were calculated using custom MATLAB scripts. For neuronal culture electrophysiology, ZX1 potentiation was measured as the percent increase in NMDAR amplitude 5 min after the application of ZX1. In slice experiments, ZX1 potentiation was calculated as the average percent increase over baseline of NMDAR or AMPAR EPSCs 10 to 15 min after the addition of ZX1 (Figs. 3, 4, 5, and 6, D to F) or 15 to 20 min after the addition of ZX1 (Fig. 6, A to C). Unpaired t tests and ANOVAs were used to compare between treatments and genotypes. To determine whether ZX1 significantly potentiated responses, paired t tests were used to compare amplitude of peak responses before and after addition of ZX1. Statistical analysis was completed in Prism 8 (GraphPad).
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2

Whole-Cell Patch-Clamp Recording Technique

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Whole-cell recordings are performed with a patch clamp amplifier (Multiclamp 700B; Axon Instruments) using pipettes with input resistance of 4–9 MΩ. Data acquisition is performed by National Instruments AD boards and custom software (Ephus; Suter et al., 2010 (link)). Ephus is written in MATLAB (Mathworks) and adapted to our setup. Voltages were corrected for an estimated junction potential of 10 mV. Electrodes are filled with (in mM) 115 cesium methanesulfonate (CsCH3SO3), 5 NaF, 10 EGTA, 10 HEPES, 15 CsCl, 3.5 MgATP, and 3 QX-314 (pH 7.25; 300 mOsm). Biocytin or Neurobiotin (0.5%) is added to the electrode solution as needed. Series resistances were typically 20–25 MΩ.
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3

Whole-cell Recordings in Mouse A1 Cortex

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Whole-cell recordings were performed with a patch clamp amplifier (Multiclamp 700B, Molecular Devices) using pipettes with input resistance of 4–9 MΩ. Cells targeted for recording were located in an area of A1 overlying the rostral flexure of the hippocampus. Thus, we sampled cells in a restricted central area of A1. Targeted cells were located in layers 2/3 and showed pyramidal morphology. Data acquisition was performed by National Instruments AD boards and custom software (Ephus) (Suter et al., 2010 (link)), which is written in Matlab (Mathworks) and adapted to our setup. Voltages were corrected for an estimated junction potential of 10mV. Electrodes were filled with an internal solution containing (in mM): 115 cesium methanesulfonate (CsCH3SO3), 5 NaF, 10 EGTA, 10 HEPES, 15 CsCl, 3.5 MgATP, and 3 QX-314 (pH 7.25, 300 mOsm). Biocytin or neurobiotin (0.5%) was added to the electrode solution as needed. Series resistances were typically 20–25 MΩ.
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4

Whole-Cell Patch-Clamp Recording Technique

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Whole-cell recordings are performed with a patch clamp amplifier (Multiclamp 700B; Axon Instruments) using pipettes with input resistance of 4–9 MΩ. Data acquisition is performed by National Instruments AD boards and custom software (Ephus; Suter et al., 2010 (link)). Ephus is written in MATLAB (Mathworks) and adapted to our setup. Voltages were corrected for an estimated junction potential of 10 mV. Electrodes are filled with (in mM) 115 cesium methanesulfonate (CsCH3SO3), 5 NaF, 10 EGTA, 10 HEPES, 15 CsCl, 3.5 MgATP, and 3 QX-314 (pH 7.25; 300 mOsm). Biocytin or Neurobiotin (0.5%) is added to the electrode solution as needed. Series resistances were typically 20–25 MΩ.
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