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Chromo 4tm real time pcr detector

Manufactured by Bio-Rad
Sourced in United States

The Chromo 4™ Real-Time PCR Detector is a laboratory instrument designed for real-time polymerase chain reaction (PCR) analysis. It is capable of detecting and quantifying specific DNA sequences in a sample by monitoring the fluorescence levels during the amplification process.

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2 protocols using chromo 4tm real time pcr detector

1

Quantitative Analysis of Cytokine mRNA Levels

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Total RNA was isolated from cells using Trizol reagent (Molecular Research Center
Inc., Cincinnati, OH, USA). RNA concentrations were measured from the absorbance
at 260 and 280 nm. Complementary DNA (cDNA) synthesis was performed using a
Maxime RT PreMix Kit (Intron Biotechnology, Seoul, South Korea), in accordance
with the manufacturer’s protocol. The following primers were used for real-time
RT-PCR analyses: IL-6, 5′-GTA CTC CAG AAG ACC AGA GG-3′ and 5′-TGC TGG TGA CAA
CCA CGG CC-3′; IL-1β, 5′-CAG GAT GAC ATG AGC ACC-3′ and 5′-CTC TGC AGA CTC AAA
CTC CAC-3′; TNF-α, 5′-TTG ACC TCA GCG CTG AGT TG-3′ and 5′-CCT GTA GCC CAC GTC
GTA GC-3′; and β-actin, 5′-AGG CTG TGC TGT CCC TGT AT-3′ and 5′-ACC CAA GAA GGA
AGG CTG GA-3′. The levels of IL-1β, IL-6, TNF-α, and β-actin mRNAs were measured
using a Chromo 4TM Real-Time PCR Detector (Bio-Rad Laboratories Inc., Hercules,
CA, USA). For relative quantification, the reactions were performed using 2×
iQTM SYBR Green Supermix (Bio-Rad). The PCR amplification was performed for 44
cycles, each lasting 20 s at 95℃ and 65℃, and 30 s at 72℃, with initial
denaturation at 95℃ for 3 min. Cytokine mRNA levels were compared after
correction using the β-actin mRNA level as an internal standard. Expression
level was analyzed by gene expression analysis using the Chromo 4 instrument
(Bio-Rad Laboratories Inc., Hercules, CA, USA).
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2

RNA Extraction and qPCR Analysis of Aβ-Treated Cells

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RNA extraction was performed from cells collected in TRIzol solution (Life Technologies), and RNA was isolated by the TRIzol method and clean up of RNA was performed using the RNeasy kit (Qiagen) according to manufacturers’ instructions. Complimentary DNA (cDNA) was synthesized using SuperScript® III Reverse Transcriptase (Life Technologies). qPCR reactions were carried out on a Chromo4TM Real-Time PCR detector (Bio-Rad) using SYBR® Green PCR Master Mix (Life Technologies). Each reaction was carried out with a technical replicate and with three biological replicates for each target gene and three housekeeping genes. The Pfaffl mathematical model for relative transcript quantification was used for data analysis using cycle threshold (CT) values and efficiency values (Pfaffl, 2001 (link)). Comparisons of relative expression using the Pfaffl method in Aβ-treated cells compared to controls were performed using unpaired, two-tailed t-tests with 95% confidence intervals.
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