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4 protocols using l valine

1

Metabolomic Analysis of Transgenic Mice

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C57bl6/j mice were obtained from Jackson Laboratories (Stock #000664). Labeled internal standards citric acid (2,2,4,4-D4, 98%; #DLM-3487), succinic acid (2,2,3,3-D4, 98%; #DLM-584), l-valine (2,3,4,4,4,5,5,5-D8; 98%; #DLM-311), l-glutamic acid (13C5, 99%; #CLM-1800), l-glutamine (13C5, 99%, #CLM-1822), l-lysine (13C6, 99%; #CLM-2247), l-methionine (13C5, 99%; #CLM-893), and l-tryptophan (13C11, 99%; #CLM-4290) and tracer glucose (13C6, 99%, #CLM-1396) were obtained from Cambridge Isotope Laboratories, Inc. AAV8-TBG-NULL (#105536-AAV8) and AAV8-TBG-Cre (#107787-AAV8) were purchased from Addgene. Pre-filled bead mill tubes containing 1.4 mm ceramic beads (#15-340-153) were purchased from FisherScientific. Methoxaymine hydrochloride (#226904, MOX) and N-methyl-N-(trimethylsilyl) trifluoroacetamide (#694709, MSTFA) were purchased from Sigma Aldrich. Protease inhibitor cocktail (#786-437) was purchased from G Biosciences. Bio-Rad protein assay dye regent (#5000006) and 0.45 μm nitrocellulose membrane (#1620115) were purchased from Bio-Rad.
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2

Accurate Quantification of Target Amino Acids

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The purity assessed CRMs of
the target AAs (l-Proline, l-Valine, l-Isoleucine, l-leucine, l-phenylalanine, and l-tyrosine)
were obtained from the National Metrology Institute of Japan (NMIJ,
Japan). The following isotopic labeled Aas for the ISTDs were obtained
from Cambridge Isotopes Laboratory (Andover, MA): l-Proline
(U-13C5, 99%; 15N, 99%; Pro*), l-Valine (U-13C5, 97–99%;15N,97–99%; Val*), l-Isoleucine (U-13C6, 99%; 15N, 99%; Ile*), l-Leucine (U-13C6, 97–98%; 15N, 97–98%;
Leu*), l-Phenylalanine (U-13C9, 99%; 15N, 99%; Phe*), and l-Tyrosine (13C9, 99%; Tyr*). All other chemicals used in this study are summarized
in the Supporting Information.
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3

Comprehensive Lipid and Metabolite Analysis

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PC(12:0/13:0), PE(12:0/13:0), SM(d18:1/12:0) and Cer(d18:1/12:0) were purchased from Avanti Polar Lipids (Alabaster, AL, USA). Stable isotope labeled references were purchased from Cambridge Isotope Laboratories (Andover, MA, USA), including: Glycine (2-13C, 15N), L-Alanine (2,3,3,3-D4), L-Valine (D8), L-Leucine (5,5,5-D3), L-Methionine (methyl-D3), L-Phenylalanine (ring-13C6), L-Tyrosine (ring-13C6), L-Aspartic acid (2,3,3-D3), DL-Glutamic acid (2,4,4-D3), L-Ornithine: HCl (5,5-D2), L-Citrulline (5,5-D2) and L-Arginine (5-13C, 4,4,5,5-D4). Deuterium-labeled carnitine and acylcarnitines (NSK-B set) were purchased from Cambridge Isotope Laboratories (Tewksbury, MA, USA), including 2H3-Acetylcarnitine (C2), 2H3-Propionylcarnitine (C3), 2H3-Butyrylcarnitine (C4), 2H9-Isovalerylcarnitine (C5), 2H3-Octanoylcarnitine (C8), 2H9-Myristoylcarnitine (C14), and 2H3-Palmitoylcarnitine (C16). HPLC-grade ammonium acetate was purchased from Sigma-Aldrich (St. Louis, MO, USA), and HPLC-grade formic acid and acetonitrile were purchased from Thermo Fisher Scientific (Waltham, MA, USA). All solutions were prepared by LC-MS ultra-pure water.
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4

Isotopic Amino Acid Enrichment Protocol

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The following 13 C amino acids and non-labeled amino acids were used in the study: L-valine ( 13 C5, 99%), L-lysine ( 13 C6, 99%), L-histidine ( 13 C6, 97%-99%), and L-glutamine ( 13 C5, 99%), (Cambridge Isotope Laboratories, US); and L-valine, L-lysine, and glutamine (Sigma Aldrich Japan, Tokyo), and L-arginine and L-histidine (FUJIFILM Wako Pure Chemical Corporation, Japan).
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