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6430 triple quadrupole qqq mass spectrometer

Manufactured by Agilent Technologies

The 6430 Triple Quadrupole (QQQ) mass spectrometer is a highly sensitive analytical instrument designed for quantitative and qualitative analysis of complex samples. It utilizes triple quadrupole technology to provide accurate mass measurements and reliable detection of target analytes.

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4 protocols using 6430 triple quadrupole qqq mass spectrometer

1

Quantification of Metabolites in Seedlings

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Three-week-old seedlings (∼25 mg) grown on plates were collected at the end of the night and snap frozen in liquid nitrogen. Metabolites were extracted as previously specified (Lee et al. 2021 (link)). For LC-MS analysis of organic acids, sample derivatization was carried out based on a previously published method with modifications (Han et al. 2013 (link)). Samples were analyzed by an Agilent 1100 HPLC system coupled to an Agilent 6430 Triple Quadrupole (QQQ) mass spectrometer equipped with an electrospray ion source as described previously (Lee et al. 2021 (link)). For amino acid quantification, dried samples were resuspended in 50-ml water and analyzed as described in Le et al. (2021) (link).
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2

GC-MS and SRM-MS Analysis of Metabolites

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For GC-MS analysis of sugars, derivatised metabolite samples were analysed by an Agilent 6890 gas chromatograph coupled with a 7683B Automatic Liquid Sampler and a 5973N mass selective detector. For SRM-MS analysis of organic acids. For measuring organic acids amino acids, samples were analysed by an Agilent 1100 HPLC system coupled to an Agilent 6430 Triple Quadrupole (QQQ) mass spectrometer equipped with an electrospray ion source. A detailed description is provided in SI Methods.
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3

HPLC-MS/MS Metabolite Quantification

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Samples were analysed by an Agilent 1100 HPLC system coupled to an Agilent 6430 Triple Quadrupole (QQQ) mass spectrometer equipped with an electrospray ion source as described previously (2) . Chromatographic separation was performed on a Kinetex C18 column, using 0.1% formic acid in water (solvent A) and 0.1% formic acid in methanol (solvent B) as the mobile phase for binary gradient elution. The elution gradient was 18% B at 1 min, 90% B at 10 min, 100% B at 11 min, 100% B at 12 min, 18% B at 13 min, and 18% B at 20 min. The column flow rate was 0.3 mL/min; the column temperature is 40 °C, and the autosampler was kept at 10 °C. Selective reaction monitoring (SRM) transitions for targeted TCA cycle metabolites and their isotopically labelled versions are shown previously (2) . Data acquisition was performed using Agilent MassHunter Workstation Data Acquisition software. Metabolite quantitation of both unlabelled and labelled metabolites was carried out based on calibration curves obtained with unlabelled authentic standards and normalized against internal standards.
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4

HPLC-MS/MS Metabolite Quantification

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Samples were analysed by an Agilent 1100 HPLC system coupled to an Agilent 6430 Triple Quadrupole (QQQ) mass spectrometer equipped with an electrospray ion source as described previously (2) . Chromatographic separation was performed on a Kinetex C18 column, using 0.1% formic acid in water (solvent A) and 0.1% formic acid in methanol (solvent B) as the mobile phase for binary gradient elution. The elution gradient was 18% B at 1 min, 90% B at 10 min, 100% B at 11 min, 100% B at 12 min, 18% B at 13 min, and 18% B at 20 min. The column flow rate was 0.3 mL/min; the column temperature is 40 °C, and the autosampler was kept at 10 °C. Selective reaction monitoring (SRM) transitions for targeted TCA cycle metabolites and their isotopically labelled versions are shown previously (2) . Data acquisition was performed using Agilent MassHunter Workstation Data Acquisition software. Metabolite quantitation of both unlabelled and labelled metabolites was carried out based on calibration curves obtained with unlabelled authentic standards and normalized against internal standards.
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