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9 protocols using ova alexa647

1

Dendritic Cell Antigen Processing Assays

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To measure antigen (Ag) uptake, DCs (3×105/sample) were left untreated, or pretreated with LPS (100 ng/ml) and 10 ng/ml of CyaA or CyaA-AC for 30 min. Subsequently, OVA-Alexa647 or transferrin-Alexa647 (both 5 µg/ml, Invitrogen) or Lucifer yellow (500 µg/ml, Invitrogen) were added for 30 min at 37°C. The Ag uptake was assessed by flow cytometry.
For MHC class I-restricted processing DCs (2×106/sample) were left untreated, or incubated with 10 ng/ml of CyaA or CyaA-AC ng/ml or lactacystin (10 µM, Sigma-Aldrich) and LPS (100 ng/ml) for 30 min. Protein concentration in lysate was determined by MicroBCA™ Protein Assay kit (Pierce). 50 µg of proteins in 20 mM Tris-HCl, pH 7.4 was mixed with 100 µM Z-Leu-Leu-Glu-AMC, Suc-Leu-Leu-Val-Tyr-AMC or Boc-Leu-Arg-Arg-AMC fluorogenic substrates (BIOMOL) and incubated for 90 min at 37°C. The fluorescence of liberated 7-amino-4-methylcoumarin was measured using a microplate reader (380ex/460em, Safire2, Schoeller Instruments).
For MHC class II-restricted Ag processing DCs (1×106/sample) were left untreated, or incubated with 10 ng/ml of CyaA or CyaA-AC or chloroquine (100 µM, Sigma-Aldrich) and LPS (100 ng/ml) for 30 min. DCs were subsequently loaded with a mixture of OVA-Alexa647 and OVA labeled with BODIPY FL dye (OVA-DQ, both 5 µg/ml, Invitrogen) for 30 min at 37°C and analyzed by flow cytometry [32] (link).
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2

Fasting Modulates OVA Uptake

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Mice in the fasting group were fasted for 36 h. After 48-h refeeding (Figure 1A; on day 0), the mice were orally administered 200 μg of OVA-Alexa 647 (Thermo Fisher Scientific) in 200 μL PBS at 8:00 a.m. and sacrificed at 11:00 a.m. The entire small intestine was collected, and OVA-Alexa 647-containing cells were analyzed using flow cytometry. The threshold for OVA-Alexa Fluor 647 expression was determined using PBS-treated negative control mice.
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3

Ovalbumin Immunization in Mice

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Mice were immunized i.v. with OVA (Grade V; Sigma-Aldrich) or OVA-Alexa 647 (Life technologies, Carlsbad, CA) alone, or with IgE anti-OVA pre-mixed with OVA or OVA-Alexa 647 in 200 μl PBS. The doses used are indicated in each figure.
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4

Maleimide-Functionalized Immunostimulatory Nanoparticles

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ICMVs were generated as previously described. Briefly, 0.1 mg of DOPG 0.4 mg of DOPC and 0.65 mg of maleimide containing lipid MPB were combined in chloroform and dried to lipid films (lipids from Avanti Polar Lipids). These films were resuspended in a buffer of 20 mM Bis-tris propane pH 7.2 containing 10.0 mg/ml Alexa647-OVA (Life Technologies), or 0.7 mg/ml of the IL-15Sa ALT-803 (Altor Bioscience Corporation), by multiple rounds of vortexing. Mixtures were sonicated for 5 minutes to form unilamellar nanoparticles and then CaCl2 was added to induce the fusion of particles into multilamellar structures. Particles were then crosslinked by treating with DTT, resulting in the formation of covalent bonds between maleimide functional groups in neighboring lipid bilayers. Particles were then pelleted, washed twice with water, and resuspended in XVIVO-10 serum-free medium (Lonza). IL-15Sa encapsulation was determined by lysing particles and performing enzyme linked immunosorbent assay (ELISA), and calculated as 2.46 ± 0.10 μg of IL-15Sa per 1.15 mg of lipid (0.21%).
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5

Phagosome Isolation and Analysis

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Octadecyl C18 1µm magnetic beads (SiMAG, Chemicell) were coated with Alexa647-OVA (Life Technologies) in acetate buffer pH: 5.0 for 2 h at RT. After washing, beads were added to treated or infected BMDMs with a ratio of 300 beads per cell. After 24 h, cells were lysed, and Alexa647-OVA-coated magnetic beads were extracted as described above for the isolation of bead phagosomes. Isolated phagosomes were then resuspended in 1% formaldehyde (in PBS) and Alexa647-OVA signal was acquired and analyzed using a FACSCanto flow cytometer and Flowjo software respectively.
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6

Neonatal Viral Infection in Mice

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Adult (8–14 week old) male and female CB6F1 mice were obtained from Jackson Labs (Bar Harbor, ME) or bred in-house. Neonatal CB6F1 mice were bred in-house, the offspring of mating BALB/c female mice with C57Bl/6 males. TCR transgenic mice were produced by NCI-Frederick Laboratory Animal Sciences Program (LASP) transgenic mouse model service and subsequently bred as heterozygotes in-house as previously described (25 (link)). Batf3−/− BALB/c and C57Bl/6 mice were obtained from Jackson Labs and bred in-house to obtain both neonatal and adult Batf3-deficient hybrid mice. All mice were housed in our animal care facility at NIAID under specific pathogen-free conditions, and maintained on standard rodent chow and water supplied ad libitum. Neonatal mice were infected at 7 days old. Mice were anesthetized using isoflurane (3%), and infected intranasally with 2×106 PFU of live RSV in 10% EMEM (100 μl for adults, 25 μl for mice infected at 7 days of age). For influenza infection, neonates were infected intranasally with 25μL of PBS containing 600 TCID50 of influenza/PR8 using the same method. All mice were euthanized by lethal overdose of pentobarbital (250 mg/kg). Experiments involving co-administration of either OVA-Alexa647 or OVA-DQ (Invitrogen) were performed by adding 50 μg protein/mouse directly to virus preparations prior to intranasal administration.
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7

Neonatal Viral Infection in Mice

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Adult (8–14 week old) male and female CB6F1 mice were obtained from Jackson Labs (Bar Harbor, ME) or bred in-house. Neonatal CB6F1 mice were bred in-house, the offspring of mating BALB/c female mice with C57Bl/6 males. TCR transgenic mice were produced by NCI-Frederick Laboratory Animal Sciences Program (LASP) transgenic mouse model service and subsequently bred as heterozygotes in-house as previously described (25 (link)). Batf3−/− BALB/c and C57Bl/6 mice were obtained from Jackson Labs and bred in-house to obtain both neonatal and adult Batf3-deficient hybrid mice. All mice were housed in our animal care facility at NIAID under specific pathogen-free conditions, and maintained on standard rodent chow and water supplied ad libitum. Neonatal mice were infected at 7 days old. Mice were anesthetized using isoflurane (3%), and infected intranasally with 2×106 PFU of live RSV in 10% EMEM (100 μl for adults, 25 μl for mice infected at 7 days of age). For influenza infection, neonates were infected intranasally with 25μL of PBS containing 600 TCID50 of influenza/PR8 using the same method. All mice were euthanized by lethal overdose of pentobarbital (250 mg/kg). Experiments involving co-administration of either OVA-Alexa647 or OVA-DQ (Invitrogen) were performed by adding 50 μg protein/mouse directly to virus preparations prior to intranasal administration.
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8

Murine Myeloid Immune Cell Staining

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Primary antibodies specific for murine CD11c (clone N418), CD206 (MMR) (clone C068C2), CD115 (CSF-1R) (clone AFS98), Dectin-1 (CLEC7A) (clone RH1), MHC class I and MCH class II (I-Ab) (clone AF6-120) were from Biolegend (San Diego, CA). Ly6C (clone HK1.4) was purchased from Ebioscience and CD36 (clone CRF D2712), CD25 (clone PC61), CD4 (clone RM4-5) and CD8 (clone 53.6.7) were purchased from BD-Bioscience (San Jose, CA). DQ ovalbumin, OVA-Alexa 647, Dextran Alexa Fluor® 488 (mw 10,000) Anionic Fixable, Staphylococcus aureus (wood strain without protein A) BioParticles®, Alexa Fluor® 488 conjugate pHrodo® Green Escherichia coli BioParticles® were purchased from Molecular Probe (Eugene, Oregon). Nigericin sodium salt was purchased from Enzo Life sciences (Farmingdale, New York). Monensin sodium salt was purchased from Amresco (Solo, Ohio).
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9

MHC Pentamer Staining Protocol

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Endotoxin-free OVA protein was from Profos (Regensberg, Germany). OVA (SIINFEKL), Smcy (KCSRNRQYL) and Uty (WMHHNMDLI) peptides were from Polypeptide (Strasbourg, France). Fluorescein isothiocyanate (FITC), PKH-26 and latex beads amine-modified polystyrene fluorescent red were from Sigma (St. Quentin Fallavier, France). Fluoprobes 647 was from Fluoprobes (Montluçon, France). DDAO-SE and OVA-Alexa 647 were from Molecular Probes (Montluçon, France). Anti-CD4 Pacific blue, anti-CD8 PECy7, anti-CD69 Biotin, anti-Vα2 FITC, CD19 APC and Annexin V APC were from BD (Le Pont-De-Claix, France). Anti-cathepsin S antibody was from Santa Cruz Biotechnology (Santa Cruz, CA). H-2Db WMHHNMDLI (Uty), H-2Db KCSRNRQYL (Smcy), H-2Kb SIINFEKL (OVA), H-2Kb VNHRFTLV (Trypanosoma Cruzi, control) pentamers were from Proimmune (Oxford, UK). Pentamers stainings were performed according to the manufacturer’s instructions (Pro5®Recombinant murine MHC Pentamer; ProImmune, Oxford, UK). The pentamers used in this study were H-2Db WMHHNMDLI (Uty) and H-2Db KCSRNRQYL (Smcy).
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