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Gotaq colorless master mix kit

Manufactured by Promega
Sourced in United States

The GoTaq Colorless Master Mix kit is a ready-to-use solution for polymerase chain reaction (PCR) amplification. It contains a DNA polymerase, reaction buffer, dNTPs, and a tracking dye, all pre-mixed for convenient setup of PCR experiments.

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4 protocols using gotaq colorless master mix kit

1

Primer Design and PCR Amplification of Bovine TLR4 Gene

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The primer pairs used to amplify the coding region of the TLR4 gene (Table 1) were designed using the Primer3 tool (http://bioinfo.ut.ee/primer3-0.4.0/), based on the Bos taurus sequence (GenBank accession number: AC_000165.1). The TLR4 gene consists of 3 exons. Exons 1 and 3 include coding regions and the non-coding regions 5'UTR and 3'UTR, respectively. One pair of primers was designed for exons 1 and 2 each, whereas three further pairs of primers were designed for exon 3.
The amplification of coding regions of the TLR4 gene was performed by polymerase chain reaction (PCR) assays, which were conducted in Bio-rad S1000 thermal cyclers (Bio-Rad, Hercules, CA, USA) in a final volume of 15 μL, consisting of 100 ng of genomic DNA, 15 pM of each primer and the GoTaq Colorless MasterMix kit (Promega, Madison, WI, USA). The thermal profile was expressed by initial denaturation at 95°C for 5 min, followed by 34 cycles of denaturation at 95°C for 30 s; annealing at the melting temperature of each primer (Table 1) pair for 30 s; and extension at 72°C for 30 s. A final extension at 72°C for 5 min was performed. Further, 2 μL of PCR products were visualized by electrophoresis on 2% agarose gels stained with the GelRed system (Biotium, Inc., Hayward, CA, USA).
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2

Cytogenetic Analysis of B-cell ALL

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Cytogenetic data regarding the defining gene fusions of the ALL subtypes: BCR-ABL, ETV6-RUNX1, MLL-AF4, SIL-TAL and TCF3-PBX1 were obtained for 99 B-cell ALL patients investigated. Hyperdiploidy data were not available for most patients and were therefore not included in the study.
Venipuncture and blood collection containing anticoagulant (EDTA) from patients with ALL were performed. The blood was submitted to Ficoll Histopaque® (Sigma-Aldrich, USA) according to the manufacturer's protocol for lymphocyte separation. Subsequently, it was subjected to RNAeasy Mini Kit processing (Qiagen, USA) as standard protocol for total RNA extraction and cDNA conversion using the High Capacity cDNA Reverse Transcription Kit (Applied Biosystems, USA) according to manufacturer's instructions. For gene fusion analysis, the c-DNA obtained was used to amplify molecular targets by Polymerase Chain Reaction with the GoTaq® Colorless Master Mix kit (Promega, USA), according to the protocol instructions, using primers designed for RT-PCR multiplex reaction for fusions of interest, similar to those described by Galehdari et al. [16] with modifications.
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3

Mating Type Determination by PCR

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The mating type of each strain was determined through PCR by using primers specific to the mating idiomorphs, with the primer sets Gfmat1a and Gfmat1b for MAT1-1, and Gfmat2c and Gfmat2d for MAT1-2 (Steenkamp et al. 2000) . The PCR were performed using the GoTaq Colorless Master Mix kit (Promega, USA). The amplification conditions were: 95 °C for 90 s, 30 cycles at 95 °C for 30 s, 55 °C for 45 s, and 72 °C for 1 min, followed by a cycle at 72 °C for 5 min for both MAT regions. The amplified fragments were evaluated in agarose gel stained with GelRed under UV light and recorded using the Gel Logic 200 imaging system (Kodak, USA).
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4

Mating Type Determination by PCR

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The mating type of each strain was determined through PCR by using primers specific to the mating idiomorphs, with the primer sets Gfmat1a and Gfmat1b for MAT1-1, and Gfmat2c and Gfmat2d for MAT1-2 (Steenkamp et al. 2000) . The PCR were performed using the GoTaq Colorless Master Mix kit (Promega, USA). The amplification conditions were: 95 °C for 90 s, 30 cycles at 95 °C for 30 s, 55 °C for 45 s, and 72 °C for 1 min, followed by a cycle at 72 °C for 5 min for both MAT regions. The amplified fragments were evaluated in agarose gel stained with GelRed under UV light and recorded using the Gel Logic 200 imaging system (Kodak, USA).
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