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22 protocols using 2 aminoethyl diphenylborinate 2 apb

1

Endometrial Mesenchymal Stem Cell Culture and Characterization

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The endometrial mesenchymal stem cell (eMSC) line isolated from the desquamated endometrium of the menstrual blood of a healthy donor (line no. 2804, [11 (link)]) was a gift from the Department of Intracellular Signalling and Transport, Institute of Cytology, RAS. The cells had properties that are typical for MSCs, including fibroblast-like morphology, multipotency and the expression of standard surface markers [62 (link)]. Cells were grown in DMEM/F12 cultural medium (Gibco, Waltham, MA, USA) with 10% fetal bovine serum (HyClone, Logan, UT, USA) and 1% penicillin/streptomycin (Gibco, Waltham, MA, USA). The cells were maintained in culture flasks at 37 °C in 5% CO2. 2-[(2,6-dichlorophenyl) methylsulfanyl]-5-pyrazin-2-yl-1,3,4-thiadiazole (Yoda1) was purchased from Tocris (Tocris, Abington, United Kingdom, cat. no. 5586). 2-aminoethyl diphenylborinate (2-APB) and thapsigargin (TG) were purchased from Sigma-Aldrich (Sigma-Aldrich, St.Louis, MO, USA, cat. no. D9754 and T9033, respectively).
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2

Synthetic Peptides and Small Molecules for Biological Investigations

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TLQP-21 (TLQPPASSRRRHFHHALPPAR), YATL-23 (YATLQ PPASSRRHFHHALPPAR), TLQP-62 (TLQPPASSRRRHFHHA LPPARHHPDLEAQARRAQEEADAEERRLQEQEELEN-YIEH VLLHRP), TLQP-8 (TLQPPASS), HFHH-10 (HFHHALPP AR), HHPD-41 (HHPDLEAQARRAQEEADAEERRLQEQEELE NYIEHVLLHRP), and LRPS-21 (LRPSHTRPAHQSFARP LHRPA) have been synthesized by us using conventional solid phase synthesis.
Cyclosporine A (CsA), thapsigargin (TG), U73122, 2-Aminoethyl diphenylborinate (2-APB), SKF-96365, YM-58483, and EGTA were purchased from Sigma–Aldrich (St Louis, MO, USA). Unless otherwise specified, all other reagents were from Sigma–Aldrich.
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3

Tetracycline and 2-APB Protocol

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2-Aminoethyl diphenylborinate (2-APB) and tetracycline were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ginsenoside Rd (Gin Rd) was purchased from Cayman Chemical Company (Ann Arbor, MI, USA). Waixenicin A was obtained from F. David Horgen’s lab at Hawaii Pacific University (Honolulu, HI, USA). The cell lines underwent serum starvation for 24 h before drug treatment. HEK-M7 was induced by 10 µg/mL tetracycline for 24 h before the starvation. All the assays were conducted after 24 h treatment, except for the patch-clamp and fluorescence quench assay.
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4

Lidocaine Dilution for Cell Cultures

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Generic Equivalent to Xylocaine® (preservative free lidocaine HCl, 1%, 10 mg/mL parenteral solution) was purchased from Hospira Inc. (Lake Forest, IL, USA). The lidocaine was diluted into the culture medium accordingly. GdCl2, tetracycline, and 2-Aminoethyl diphenylborinate (2-APB) were purchased from Sigma-Aldrich (St. Louis, MO, USA), while 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and Fura-2-acetoxymethyl ester (fura-2AM) were purchased from Abcam (Cambridge, UK).
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5

Hyperoside Modulation of Inflammatory Pathways

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Hyperoside (purity ≥ 98%, Lot. No. JOT-10,193) was ordered from Chengdu Pufei De Biotech Co., Ltd (China). 2-Aminoethyl diphenylborinate (2-APB) and lipopolysaccharides (LPS) were obtained from Sigma-Aldrich (USA). Calf thymus DNA (ctDNA), Lipofectamine 2000, Dulbecco’s Modified Eagle’s Medium (DMEM), and penicillin/streptomycin were products from Thermo Fisher Scientific (USA). Fetal bovine serum (FBS) was ordered from Nobimpex (Germany). 2′,3′-Cyclic guanosine monophosphate–adenosine monophosphate (cGAMP) sodium and 5,6-dimethyl-9-oxo-9 H-xanthene-4-acetic acid (DMXAA) were products from MedChemExpress (USA). Evans blue dye was purchased from Solarbio (China).
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6

Pharmacological Modulation of Neurotransmitter Signaling

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We purchased 1-(3-Chlorophenyl) biguanide hydrochloride (mCPBG), gabazine, DL-2-amino-5-phosphono-valeric acid (DL-APV), 1,2-bis(2-aminophenoxy)ethane-N,N,N,N-tetraacetic acid (BAPTA), SCH50911, 6, 7-dinitroquinoxaline-2, 3-dione (DNQX), tetrodotoxin (TTX), strychnine, SB-200646 hydrochloride (SB200646), ritanserin (RIT), ondansetron hydrochloride dihydrate (OND) and serotonin hydrochloride (5-HT), 2-Aminoethyl diphenylborinate (2-APB) and other common salts from Sigma-Aldrich Chemical Company (St Louis, MO, USA); and Citalopram hydrobromide, WAY100635 and 1-(3-Chlorophenyl) piperazine hydrochloride (mCPP) from Tocris Bioscience (Ellisville, MO, USA).
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7

Assessing Caspase-mediated Apoptosis Pathways

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Cell culture reagents were obtained from Gibco-Invitrogen (Grand Island, NY, USA). DIDS, staurosporine (STS), histamine, 2-Aminoethyl diphenylborinate (2-APB), flufenamic acid, gramicidin (Gram), Ac-DEVD-AMC (caspase-3 substrate), Ac-DEVD-CHO (caspase-3 inhibitor), Ac-LEHD-AFC (caspase-9 substrate), Ac-IETD-CHO (caspase-8 inhibitor), DMSO, Hoechst 33258 and protease inhibitor cocktail were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ac-IETD-AMC (caspase-8 substrate) was obtained from Enzo Life Sciences (Lausen, Switzerland). Fura2-AM and DiBaC4 (3) (Bisoxonol) were obtained from Invitrogen (Molecular Probes, Eugene, OR, USA). z-VAD-fmk was purchased from Promega (Madison, WI, USA). Mouse anti-cytochrome c monoclonal antibody (Clone 7H8.2C12) and mouse anti-human PARP (Clone 4C10-5) were purchased from BD-Pharmingen (Chicago, IL, USA). Mouse anti-Caspase-3 (Clone 3G2) was obtained from Cell Signaling (Danvers, MA, USA). Mouse anti-β-tubulin was acquired from ZYMED (Carlsbad, CA, USA). Importantly, DIDS was prepared as a 50-mM stock in dehydrated DMSO, to avoid the hydrolysis of isothiocyanate groups.34 (link) In control studies, 1% dehydrated DMSO neither induced caspase-3 activity nor blocked STS-induced caspase-3 activity (Supplementary Figure S6).
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8

Culturing Normal Human Hepatocytes for Emodin Studies

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The normal human hepatocyte cell line (L02) was purchased from the Type Culture Collection of the Chinese Academy of Sciences, Shanghai, China. The L02 cells were cultured in complete RPMI-1640 medium (Gibco, Thermo Fisher Scientific, USA) containing 10% fetal bovine serum (FBS, 11011-861, EVERY GREEN) and 1% penicillin-streptomycin (10 kU/mL-10 mg/mL, FG101-01, Transgene, China) and maintained in an incubator with 5% CO2 at 37°C. The culture medium was renewed every two days, and cells were passaged at 80% confluence using 0.25% trypsin-EDTA. Emodin was purchased from EFEBIO Company (E054323, 98% (HPLC), China). (2-(2,2,6,6-Tetramethylpiperidin-1-oxyl-4-ylamino)-2-oxoethyl) triphenylphosphonium chloride (MitoTEMPO or MT, SML0737, ≥98% (HPLC)) and 2-aminoethyl diphenylborinate (2-APB, #9754, 97% (HPLC)) were from Sigma-Aldrich (China). N-Acetyl-L-cysteine was acquired from Beyotime Biotechnology (NAC, S0077, >99%, China). Tunicamycin (TM) and doxorubicin (DOX) were purchased from Solarbio Life Science (T8480 and D8740, China), and their purities were both more than 98%.
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9

Lipid Mediator Characterization Protocol

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Synthetic LXA4 was purchased from EMD Millipore (Billerica, MA) and RvD1 was purchased from Cayman Chemical, Ann Arbor, MI). Both compounds were dissolved in ethanol as supplied by the manufacturer and were stored at −80 °C with minimal exposure to light. Immediately prior to use, each SPM was diluted in with Krebs-Ringer bicarbonate buffer with HEPES (KRB-HEPES, 119 mM NaCl, 4.8 mM KCl, 1.0 mM CaCl2, 1.2 mM MgSO4, 1.2 mM KH2PO4, 25 mM NaHCO3, 10 mM HEPES, and 5.5 mM glucose [pH 7.45]) to the desired concentrations and added to the cells. The LXA4 analogs were prepared as described previously 16 (link), 17 (link). The cells were incubated at 37 °C in the dark. Daily working stock dilutions were discarded following each experiment. Annexin A1 (AnxA1) was purchased from MyBiosource (San Diego, CA). Aristolochic acid, 2-aminoethyl diphenylborinate (2-APB), 1 butanol and t-butanol were from Sigma Aldrich (St Louis, MO) while U0126 was purchased from R&D Systems (Minneapolis, MN). H89 and R0-31317549 were obtained from EMD Millipore (Billerica, MA).
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10

Extraction and Characterization of Plant Compounds

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n-Octanol (99% analytical grade, AR), n-octanoic acid (99.0% AR), n-decanol (98%), and n-decanoic acid (99%, AR) were obtained from Macklin Biochemical Co., Ltd., Shanghai, China. Absolute ethanol was provided by Sinopharm Chemical Reagent Co., Ltd., Shanghai, China. 2-Aminoethyl diphenylborinate (2-APB, 97%) was sourced from Sigma Aldrich, Merck, Germany. Reference standards, including caffeic acid and rosmarinic acid (both ≥98% purity), were purchased from Chengdu DesiTe Biological Technology Co. Ltd., Chengdu, China. The salviaflaside standard was prepared at the laboratory of Hunan University of Chinese Medicine. Methanol was purchased from TEDIA (Fairfield, OH, USA). Purified water was prepared using a Mili-Q water purification system (Millipore, Burlington, MA, USA). All other reagents were of analytical quality and acquired commercially.
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