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27 protocols using ab32143

1

Quantifying pSTAT3 in 3D Spheroids

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For all confocal imaging experiments clear bottom black walled plates with optical properties similar to glass coverslips were used (µ-Plate 24 Well Black, IBIDI, Fitchburg, WI). Four hours post-treatment spheroids were fixed using 10% buffered formalin for an hour at 25°C, rinsed with PBS, then permeabilized with 0.25% Triton-X for 45 minutes at 37°C. Non-specific protein interactions were blocked by incubating samples in 5% BSA for 24 hours at 37°C, followed by incubation with anti-STAT3 (phospho S727, 1:500, ab32143, Abcam, Cambridge, MA) for 24 hours at 37°C. Samples were rinsed with PBS and then incubated with secondary antibody (1:350 goat-anti rabbit IgG Alexa Fluor 647) for 24 hours at 37°C protected from light. After rinsing with PBS, samples were incubated with DAPI (1:1000) for 45 minutes at 37°C to visualize cell nuclei. Samples were washed with PBS and imaged on a Nikon A1R confocal laser microscope with a PLAN APO VC 20× 0.75-NA objective. Samples were imaged at the Nyquist optimized step size and phosphorylated STAT3 median fluorescent intensity (MFI) was calculated every five microns for each spheroid using ImageJ software. The edge of the spheroid was defined as the area from the boundary of the spheroid to four nuclei in from the boundary of the spheroid, and the center was defined as the remaining area.
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2

Comprehensive Protein Analysis by Western Blot

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Total protein was resolved by SDS-PAGE (10–15% Tris-Glycine), transferred onto Hybond nitrocellulose membrane (Amersham biosciences) and probed with antibodies specific for Phospho-STAT3 (S727) (ab32143, abcam), Phospho-STAT3 (Y705) (9131, Cell Signalling Technology (CST)), Total STAT3 (C-20: sc-482, Santa Cruz Biotechnology), Phospho-STAT5 (Y694) (9314, CST), Phospho-JAK2 (Y1007/1008) (3776, CST), Total JAK2 (3230, CST), involucrin (SY5, Santa Cruz Biotechnology), HPV18 E6 (G-7, Santa Cruz Biotechnology), HPV18 E7 (8E2, Abcam (ab100953), HPV 16/18 E6 (C1P5, Santa Cruz Biotechnology), HPV 16 E7 (ED17, Santa Cruz Biotechnology), Phospho-ERK1/2 (Thr202/Tyr204) (43705, CST), Phospho-JNK (Thr183/Tyr185) 4668, CST), Phospho-p38 (Thr180/Tyr182) (9211, CST), Bcl xL (H-62, Santa Cruz Biotechnology), Cyclin D1 (A-12, Santa Cruz Biotechnology) p53 (FL-393, Santa Cruz Biotechnology), p21 (2947, CST), FLAG (F3165, Sigma), GFP (B-2: sc-9996, Santa Cruz Biotechnology) and GAPDH (G-9, Santa Cruz Biotechnology). Western blots were visualized with species-specific HRP conjugated secondary antibodies (Sigma) and ECL (Thermo/Pierce).
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3

Comprehensive Western Blot Analysis Protocol

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Western blot was performed as previously described (11 (link)). The primary antibodies used included anti-CD206 (ab64693, Abcam), anti-Arg-1 (ab233548, Abcam), anti-Ym1 (ab192029, Abcam), anti-SIRPα (ab191419, Abcam), anti-p-STAT3 S727 (ab32143, Abcam), anti-p-STAT3 Y705 (#9664, CST), anti-STAT3 (9662, CST), anti-α-SMA (ab7817, Abcam), anti-cleaved Caspase 3 (CST; 9662), anti-Caspase 3 (CST; #3498), anti-Bcl2 (CST; #3498), anti-E-cadherin (GTX100443, GTX), and anti-GAPDH (ab181602, Abcam). The secondary antibodies included Peroxidase AffiniPure Goat Anti-Rabbit IgG (H+L) and Peroxidase AffiniPure Goat Anti-Mouse IgG (H+L) (111035003, 115035003, Jackson, West Grove, PA, USA). Protein levels were quantified using the Image Lab software, version 3.0 (Bio-Rad, Hercules, CA, USA).
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4

Comprehensive Protein Analysis by Western Blot

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Total protein was resolved by SDS-PAGE (10–15% Tris-Glycine), transferred onto Hybond nitrocellulose membrane (Amersham biosciences) and probed with antibodies specific for phospho-STAT3 (S727) (ab32143, abcam), phospho-STAT3 (Y705) (9131, Cell Signalling Technology (CST)), STAT3 (124H6: 9139, CST), phospho-NFκB p65 (S536) (93H1; 3033, CST), NFκB p65 (D14E12; 8242, CST), phospho-AKT (T308) (244F9; 4056, CST), phospho-AKT (S473) (D9E; 4060, CST), AKT (9272, CST), IL-6 (ab6672, abcam), HA (HA-7, Sigma H9658), GFP (B-2: sc-9996, SCBT), FLAG (F3165, Sigma), GAPDH (G-9, SCBT), PARP-1 (9542, CST) and Bcl-xL (2764, CST). Western blots were visualized with species-specific HRP conjugated secondary antibodies (Sigma) and ECL (Thermo/Pierce). Densitometry analysis was performed using ImageJ analysis software (NIH, USA).
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5

Western Blot Analysis of Cellular Proteins

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Total protein was collected from cells with RIPA lysis Mix. Western blotting assay was performed as previously described [23 (link)]. Briefly, 60 μg protein extractions were loaded via SDS-PAGE and transferred onto nitrocellulose membranes (absin, China), then incubated with primary antibodies for 2 hrs at temperature, then plated at 4 °C overnight, the membranes were incubated in 5% non-fat milk blocking buffer for horizontal mode 3 h. After incubation with secondary antibodies IRDye700/800 Mouse or Rabbit (Lincoln, Nebraska, USA), the membranes were scanned using an Odyssey, and data were analyzed with Odyssey software (LI-COR, USA). Primary antibodies list: DDR1 (SAB1300850, Sigma, USA), Vimentin (10366-1-AP, Proteintech, USA), N-cadherin (22018-1-AP, Proteintech, USA), E-cadherin (20874-1-AP, Proteintech, USA), GLUD1 (14299-1-AP, Proteintech, USA), GLS1 (12855-1-AP, Proteintech, USA), SLC1A5 (20350-1-AP, Proteintech, USA), STAT3 (10253-2-AP, Proteintech, USA), p-STAT3(705) (ab76315, Abcam, UK), p-STAT3(727) (ab32143, Abcam, UK), GAPDH (60004-1-Ig, Proteintech, USA).
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6

Western Blot Analysis of STAT3 and Nogo

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The cell and tissue lysates were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis. Proteins were transferred onto nitrocellulose membranes (Millipore, Bedford, MA). These membranes were then blocked in Tris-buffered saline (pH 7.4) containing 5% nonfat milk and 0.1% Tween-20, incubated with primary antibodies for 2 hours at room temperature (RT), washed three times (5 minutes each) in Tris-buffered saline containing 0.1% Tween-20, and followed by incubation with the secondary antibody for 1 hour at RT. The membranes were washed three times (15 minutes each). Immunoreactivity was visualized by enhanced chemiluminescence (GE Healthcare, NJ). The antibodies used include anti-STAT3 (ab68153, Abcam), anti-pSTAT3 (S727) (ab32143, Abcam), anti-Nogo (N-18) (sc-11,027, Santa Cruz), Nogo-A (ab620024, Abcam), and β-actin (cat. # 612656, BD Biosciences).
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7

Immunofluorescence Analysis of CD133 and p-STAT3

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After routine detachment and transfection, cells were counted and cultured in an immunofluorescence chamber at a density of 2 × 105 cells/well. When the confluence reached approximately 90%, the cells were washed with PBS three times (this process was performed on ice). Then, cells were fixed with 1 mL of 4% paraformaldehyde for 15 minutes; cells were washed with PBS 3 times and permeabilized with 0.3% Triton. Ten minutes later, the cells were washed with PBS three times, blocked with goat serum for 30 minutes, incubated overnight at 4°C with the PBS-diluted primary antibodies against CD133 (1:1000, ab19898, Abcam Inc., Cambridge, MA, USA) and p-STAT3 (1:500, ab32143, Abcam Inc., Cambridge, MA, USA) and washed with PBS 3 times. Cells were incubated with the secondary antibody for 1 hour at room temperature in the dark. Next, the cells were washed with PBS 3 times and incubated with DAPI for 15 minutes in the dark. Cells were washed with PBS 3 times, a fluorescence quenching agent was used for mounting and cells were photographed under a fluorescence microscope.
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8

Immunoblotting of STAT, JAK, and HPV Proteins

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Total protein was resolved by SDS Polyacrylamide gel electrophoresis (SDS-PAGE) (10–15% Tris-Glycine), transferred onto Hybond nitrocellulose membrane (Amersham biosciences, Little Chalfont, UK) and probed with antibodies specific for phospho-STAT3 (S727) (ab32143, Abcam, Cambridge, UK), phospho-STAT3 (Y705) (9131, Cell Signalling Technology, Danvers, MA, USA (CST)), STAT3 (124H6:9139, CST), phospho-STAT5 (Y694) (D47E7; 4322, CST), STAT5 (D3N2B; 25656, CST), Phospho-JAK2 (Y1007/1008) (3776, CST), Total JAK2 (3230, CST), HPV18 E6 (G-7, Santa Cruz Biotechnology (SCBT)), HPV18 E7 (8E2, Abcam (ab100953), HPV 16/18 E6 (ab70, abcam), HPV 16 E7 (ED17, SCBT), Cyclin D1 (ab134175, Abcam), p21 (2947, CST), GAPDH (G-9, SCBT), PARP-1 (9542, CST) and Bcl-xL (2764, CST). Western blots were visualized with species-specific HRP conjugated secondary antibodies (Sigma, St. Louis, MO, USA) and ECL (Thermo/Pierce). Densitometry analysis was performed using ImageJ analysis software (NIH, Bethesda, MD, USA) and is provided either in the main figures or as Supplementary Material. Expanded, uncropped western blot panels are also provided as Supplementary Material. Detailed information can be found at Supplementary Figures S7–S9.
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9

Molecular Expression Analysis in Inflammation

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Western blot analyses were performed as described previously [23 (link)]. Primary antibodies against inducible nitrogen oxide synthase (iNOS) (Abcam, ab178945, Cambridge, UK), cyclooxygenase 2 (COX-2) (Abcam, ab179800, Cambridge, UK), zonula occludens-1 (ZO-1) (Abcam, ab96587, Cambridge, UK), occludin (Abcam, ab167161, Cambridge, UK), signal transducer and activator of transcript 3 (STAT-3) (Abcam, ab68153, Cambridge, UK), p-STAT-3 (Abcam, ab32143, Cambridge, UK), and GADPH (Abcam, ab8245, Cambridge, UK) were used. Protein signals were detected with efficient chemiluminescence (ECL) reagent based on the manufacturer’s instructions.
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10

DHA and IL-6 Signaling in EMT

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DHA was purchased from MedChemExpress and dissolved in dimethyl sulfoxide. Recombinant IL-6 protein was purchased from Abcam (ab208325; Cambridge, UK). Primary antibodies against E-cadherin (1:1000; ab40772; Abcam), SLUG (1:1000; ab51772; Abcam), Snail (1:1000; ab216347; Abcam), signal transducer and activator of transcription 3 (STAT3, 1:1000; ab68153; Abcam), phosphorylated (p)-STAT3 (Ser727; 1:1000; ab32143; Abcam), β-catenin (1:1000; ab32572; Abcam), and GAPDH (1:1000; ab8245; Abcam) were employed in this research.
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