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5 protocols using tim 3 f38 2e2

1

Flow Cytometric Analysis of Human NK Cells

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Human PBMC were stained using directly conjugated mAb against human CD3 (BW264/56), CD56 (REA196), CD57 (TB03), from Miltenyi Biotec (San Diego, CA, USA), Tim-3 (F38-2E2) from BioLegend and NKG2C (134591) from R&D Systems. Cells were stimulated with 1 μg anti-CD16 mAb (3G8; BioLegend) per 106 PBMC and prepared for intracellular staining by adding brefeldin A (Sigma-Aldrich) 1 h after the start of incubation to a final concentration of 10 μg/mL and continuing the incubation for an additional 4 h. NK cell degranulation was detected by introducing directly conjugated anti-CD107a mAb (H4A3; BioLegend) at a 0.25 μg per 106 PBMC at the time of brefeldin A addition. Cells were fixed and permeabilized after 5 h incubation using the Inside Stain Kit (Miltenyi Biotec) as per manufacturer's instructions and then stained with directly conjugated polyclonal Ab against human FcRγ from MilliporeSigma (Burlington, MA, USA) and anti-human IFN-γ mAb (4S.B3) from eBioscience (San Diego, CA, USA). Non-viable cells were excluded by fixable live/dead stain (Invitrogen) as per manufacturer's instructions. Data were acquired using a MoFlo Astrios EQ flow cytometer and data analyses and illustration performed using Kaluza software (both Beckman Coulter, Brea, CA, USA).
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2

Multiparameter Flow Cytometry for Immune Profiling

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For flow cytometry and FACS sorting experiments, fluorochrome-conjugated antibodies against the following antigens were used: CD45 (clone HI30; conjugated to BV421), CD3 (OKT3; BV605 & AF700), CD56 (HCD56; PE/Cy7), CD8 (SK1; BV510 & APC/Cy7), CD4 (SK3; FITC), CD19 (HIB19, PerCP/Cy5.5), CD14 (M5E2; APC), HLA-DR (LN3; BV711), PD-L1 (29E.2A3; BV605), LAG-3 (11C3C65; AF647), TIM-3 (F38-2E2; FITC & BV785), HLA-ABC (W6/32; PE/Cy7), Isotype (eBMG2b; PE) (MOPC-173; PE/Cy7) (all Biolegend); CD4 (SK3; UV395) and PD-L2 (MIH18; BV711 & BV785) (all BD Biosciences); CTLA-4 (14D3; PE/Cy7), PD-L1 (MIH1; APC), PD-1 (MIH4; FITC) (all ThermoFIsher, Waltham, MA); VZV gE (MilliporeSigma, Burlington, MA) conjugated in house to R-PE as previously described [31 (link)]. For immunofluorescence analyses experiments, unconjugated antibodies against the following antigens were used: VZV gB (Mouse: Abcam, Cambridge, MA) and VZV ORF63 (Rabbit) that was previously described [46 (link)]. Secondary antibodies consisted of Alexa Fluor 488 donkey anti-rabbit IgG and Alexa Fluor 594 donkey anti-mouse IgG (MilliporeSigma). Tetramers of HLA A*0201 and VZV ORF34 and ORF18 proteins were obtained from the Fred Hutchinson Cancer Research Center Immune Monitoring Core.
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3

Multiparameter Flow Cytometry of Macaque Immune Cells

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The following fluorochrome conjugated monoclonal antibodies reactive with macaque cells were used for flow cytometry studies: CD3 (SP34-2, BD Biosciences [BD]), CD4 (L200, BD), CD8 (SK1, BD), CD95 (DX2, BD), CD28 (CD28.2, BioLegend), CCR5 (3A9, BD), CXCR5 (MU5UBEE, Invitrogen), PD-1 (EH12.2H7, BioLegend), ICOS (C398.4A, BioLegend), CCR7 (150503, BD), α4β7 (A4B7, NHP Reagent Resource), LAG3 (3DS223H, eBioscience), Tim-3 (F38-2E2, BioLegend), TIGIT (MBSA43, Invitrogen), CD20 (2H7, BioLegend), CD19 (J3-119, Beckman Coulter), HLA-DR (L243, BioLegend), CD10 (HI10A, BioLegend), CD21 (B-ly4, BD), CD27 (O323, BioLegend), IgD (IADB6, Southern Biotech), IgG (G18-145, BD), IL-21R (2G1-K12, BioLegend), Ki-67 (B56, BD), BCL6 (IG191E/A8, BioLegend), CD80 (2D10, BioLegend), CD56 (B159, BD), CD45 (D058-1283, BD), CD14 (MoP9, BD), CD16 (3G8, BD), CCR2 (48607, R&D Systems), CD11b (ICRF44, BioLegend), CD11c (3.9, Invitrogen), PD-L1 (29E.2A3, BioLegend), PD-L2 (24F.10C12, BioLegend), CD80 (2D10, BioLegend), CD86 (FUN-1, BD), CD141 (1A4, BD), CD163 (GHI/61, BioLegend), and CD123 (7G3, BD).
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CD19 CAR T Cell Phenotyping

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CD19 CAR T cells produced from peripheral blood mononuclear cells (PBMCs) of an HD and untransduced PBMCs from three different HDs were plated at 1×106 cells per well in a 96-well plate. The plate was spun at 500× g for 5 minutes, and cells were incubated in flow cytometry blocking buffer (1× PBS containing 10% human serum and 10% mouse serum) for 10 minutes at room temperature. Cells were washed with flow cytometry wash buffer (1× PBS containing 2% FBS) and incubated with the following antibodies for 1 hour at 4°C: CD66 (B1.1/CD66), CD3 (UCHT1), CD4 (SK3), CD8 (SK1), and CD25 (2A3) from BD Biosciences, and LAG-3 (11C3C65), PD-1 (EH122H7), and TIM-3 (F382E2) from Biolegend (San Diego, CA, USA). After washing, cells were fixed and permeabilized with Transcription Factor Phospho Buffer Set (BD Biosciences) according to the manufacturer’s instructions. After washing, cells were then stained intracellularly with the following antibodies for 1 hour at 4°C: CTLA-4 (I4D3) from BD Biosciences, FOXP3 (150D) and Tbet (4B10) from Biolegend, and EOMES (WD1928) from Thermo Fisher Scientific. Samples were analyzed by flow cytometry on a BD LSRFortessa X-20 instrument with a minimum number of 50,000 cells per sample analyzed and FlowJo Software (FlowJo LLC).
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5

Comprehensive Immunophenotyping of PBMCs

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Immunophenotyping of PBMCs was performed by staining for various surface-marker combinations using the following fluorescence-conjugated antibodies: CCR7 (3D12), CD3 (UCHT1), CD4 (SK3), CD8 (SK1), CD14(61D3), CD16 (CB16), CD19 (HIB19), CD45RA (H100), CD45RO (UCHL1), CD56 (TULY56, CMSSB), CD57 (QA17A04; Biolegend, San Diego, CA, USA), CD62L (DREG-56), Lag3 (3DS223H), PD-1 (EH-12.2H7; Biolegend), and Tim3 (F38-2E2). All antibodies were purchased from eBioscience, Inc. (San Diego, CA, USA), unless mentioned otherwise. Cells were washed once with flow cytometry staining buffer, pelleted, and antibodies were added prior to incubation in the dark, at room temperature for 15 minutes. The cells were then washed and analyzed. Flow cytometry gating strategy for various lymphocytes were first based on a low forward scatter (FSC) and low side scatter (SSC) gating of lymphocytes. Then, T cell markers CD3, CD4, CD8; NK cell marker CD56 were used to identify the major lymphocyte subsets. Various markers were used to assess activation, cytokine production, and exhaustion.
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